|
Name : serS (HMPREF9137_0112) Accession : YP_004327860.1 Strain : Prevotella denticola F0289 Genome accession: NC_015311 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 124435 - 125724 bp Length : 1290 bp Strand : - Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGCTTACATTAAAGCTCATCAGTGAGGAGACCGAACGTGTCATCAAGGGACTGGAGAAGAAACACTTCGTCGGTGCGCG TGAGGCCGTTGAGAAAGTATTGGAATATGACCGTCTGCGTCGTGAAACACAGCAGAAGCTCGACACGAACAAGCAGAAGC AGAACCAGCTTTCCCGGCAGATCGGCGGACTGATGAGAGAAGGCAGGAAAGATGAAGCTGACAGCATAAAGGAAGAGGTG GCACAGCTGAAGTCGGCCGACAAGGCACTTCAGGAAATCATGGACAAAGCACAGAAGGACATGACGGACGTGCTGTTCAC CATTCCGAATGTACCGAATGATGACGTGCCGGAGGGCAAGGATGCCAGCGACAATGTCGTCGTGAAGGAAGGCGGACGGA AGCCTGATCTGCCGGCTGATGCGCAGTGCCACTGGGACCTGCTGAAGAAGTTCAATCTGGTAGACTTCGACCTCGGTGTG AAAATCACAGGGGCGGGATTCCCGCTTTACATCGGTAAGATGGCACGTTTCCAGCGGGCCTTGGAGGCCTTCTTCCTCGA TGAGGCACGCAAGAGCGGCTATCTGGAGGTGCAGCCGCCATTGGTGGTAAACCAGGACTCGGGACTTGGAACGGGGCAGC TGCCTGACAAGGAAGGACAGATGTACCATGCCAATCTCGACGACCTTTACCTCATCCCGACGGCGGAGGTGCCGGTAACC AATATCTTCCGTGACGAGATTCTCGACGAGCAGGACCTTCCTGTCAAGCGTTGTGCCTACTCCGCCTGTTTCCGTCGTGA GGCAGGAAGCTATGGGAAGGATGTACGCGGACTGAACCGTCTGCACCAGTTCGACAAGGTGGAGATTGTCCGTATAGACA AGCCGGAGCATTCTTACGCTTCCCTGAATGAGATGCTGGAGCACGTCGAAGGACTGCTGAAGAAGCTAGAGCTGCCTTAT CATATCCTGCGTCTCTGCGGCGGTGACATGAGCTTCACGTCTGCCATCTGCTACGACTTCGAGGTATGGAGTGCCGCACA GGAACGCTGGCTGGAGGTCTCCAGTGTGTCCAATTTCGAAAGCTATCAGGCCAACCGTCTGCATTGCCGTTACCGTCATG CCGACGACAAGAAGATAGAACTCTGCCATACGCTGAACGGGTCGGCATTAGCCCTGCCGCGTATTGTTGCAGCCATCATA GAGAACAACCAGACACCGGAAGGCATCCGTGTCCCGAAGGTACTTGTACCGTACTGTGGATTCGATATGCTGGACGAGAA GATGGACTAA Protein sequence : MLTLKLISEETERVIKGLEKKHFVGAREAVEKVLEYDRLRRETQQKLDTNKQKQNQLSRQIGGLMREGRKDEADSIKEEV AQLKSADKALQEIMDKAQKDMTDVLFTIPNVPNDDVPEGKDASDNVVVKEGGRKPDLPADAQCHWDLLKKFNLVDFDLGV KITGAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMYHANLDDLYLIPTAEVPVT NIFRDEILDEQDLPVKRCAYSACFRREAGSYGKDVRGLNRLHQFDKVEIVRIDKPEHSYASLNEMLEHVEGLLKKLELPY HILRLCGGDMSFTSAICYDFEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHADDKKIELCHTLNGSALALPRIVAAII ENNQTPEGIRVPKVLVPYCGFDMLDEKMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-70 | 43 |
