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Name : capD (SOR_1861) Accession : YP_004326848.1 Strain : Streptococcus oralis Uo5 Genome accession: NC_015291 Putative virulence/resistance : Virulence Product : putative nucleoside-diphosphate sugar isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1820340 - 1822190 bp Length : 1851 bp Strand : - Note : required for the biosynthesis of pneumococcal type 1 capsular polysaccharide DNA sequence : ATGAATAAAAAACTAACAGATTATGTGATTGATCTGGTTGAAATTTTAAATAAACAGCAAAAACAAGTGTTTTGGGGGAT ATTTGATATTCTGAGTATGGTGGTTTCCATCATCGTATCTTATATCTTGTTTTATGGCCTTATAAATCCGGCGCCTGTGG ATTACGTCATCTACACTCTTTTAGCCTTCCTCCTCTATCAAATCATGATTGCGTTTTGGGGGCTAAATGCTAGTATTAGT CGTTATAGCAAGATTACGGATTTCATGAAAATCTTTTTCGGAGTGATGCTCAGCAGTGTTCTTTCTTATGGAATCTGCTA TGCCTTTCTTCCATTGTTTTCTATCCGTTTCATCGTACTCTTCATTTTGTTGAGTACCTTCCTCATCTTGCTTCCTCGTA TCACTTGGCAGCTGATTTATTCTAAGCGTAAGCAAGGTAGTGGAGATGGAGAGCATCGTCGTACCTTCTTGATCGGTGCT GGTGATGGTGGTGCCCTCTTTATGAACAGCTACCAACATCCAACTAGCGACCTTGAGCTAGTGGGGATATTGGATAATGA TGAAAAGAAAAAGGGACAAAAACTAGGTGGAATCCCAGTTCTGGGCTCTTATGATAATCTACCTGAATTAGCTAAACGTC ACCAAATCGAGCGTGTCATCGTAGCGATCCCTTCGCTTGACCCATCAGAGTACGAACGCATCTTGCAGATGTGTAATAAG CTAGGCGTCAAATGTTACAAGATGCCTAAGGTTGAGACAGTCGTTCAAGGACTCCATCAACCAGGTAGTGGTTTCCAAAA AATTGATATCACAGACCTTTTGGGCCGTCAGGAAATTCGTCTCGACGAATCGCGTCTGGGTACTGAGATTACAGGCAAGA CCATCCTGGTGACAGGGGCAGGTGGTTCGATTGGTTCGGAGATTTGTCGTCAGGTTAGTCGCTTCAATCCCGAGCGTATC GTCTTGCTTGGACATGGTGAAAACTCAATCTATCTCGTTTATCATGAATTGATCCGTACATTCCAAGGGATTGATTATGT TCCTGTTATTGCAGATATTCAGGACTATGACCGTCTCTTGCAGGTGTTTGAGCAGTACAAACCAGCCATTGTTTACCATG CTGCAGCCCACAAGCACGTTCCGATGATGGAGCGCAATCCAAAAGAAGCCTTCAAGAACAATATCCTCGGTACCTACAAT GTTGCCAAGGCTGTTGATGAAGCCAAAGTACCTAAGATGGTCATGATTTCGACTGACAAGGCGGTCAATCCACCGAATGT TATGGGCGCAACCAAGCGCGTGGCAGAGTTGATTGTCACTGGCTTTAACCAACGTAGTAAATCAACCTACTGTGCAGTCC GTTTTGGGAATGTTCTCGGTAGTCGTGGTAGTGTGATTCCTGTCTTTGAACGTCAGATTGCTGAAGGCGGTCCTGTAACG GTGACAGACTTCCGTATGACACGTTACTTCATGACCATTCCAGAGGCTAGCCGTCTAGTAATCCATGCTGGCGCTTATGC CAAGGACGGAGAAGTCTTTATCCTCGATATGGGCAAACCAGTTAAGATCTATGACTTGGCTAAGAAAATGGTTCTTCTAA GTGGGCACACGGAAAGTGAAATTCCAATCGTTGAGGTCGGTATCCGCCCGGGTGAAAAACTCTATGAAGAACTCTTGGTT TCGACCGAATTGGTTGATAACCAAGTCATGGACAAGATTTTCGTTGGTAAGGTAAACGTCATGCCGCTAGAAGCCATCGA TCAAAAGATTGAAGAATTCCGTTCACTCAGTGGAGATGAGCTCAAAGAAGCGATTATTTCCTTTGCAAATGAGACAACCC ATGCTGAGTAA Protein sequence : MNKKLTDYVIDLVEILNKQQKQVFWGIFDILSMVVSIIVSYILFYGLINPAPVDYVIYTLLAFLLYQIMIAFWGLNASIS RYSKITDFMKIFFGVMLSSVLSYGICYAFLPLFSIRFIVLFILLSTFLILLPRITWQLIYSKRKQGSGDGEHRRTFLIGA GDGGALFMNSYQHPTSDLELVGILDNDEKKKGQKLGGIPVLGSYDNLPELAKRHQIERVIVAIPSLDPSEYERILQMCNK LGVKCYKMPKVETVVQGLHQPGSGFQKIDITDLLGRQEIRLDESRLGTEITGKTILVTGAGGSIGSEICRQVSRFNPERI VLLGHGENSIYLVYHELIRTFQGIDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERNPKEAFKNNILGTYN VAKAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQRSKSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVT VTDFRMTRYFMTIPEASRLVIHAGAYAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLV STELVDNQVMDKIFVGKVNVMPLEAIDQKIEEFRSLSGDELKEAIISFANETTHAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-102 | 54 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-104 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_004326848.1 | putative nucleoside-diphosphate sugar isomerase | VFG1300 | Protein | 2e-99 | 51 |
