Gene Information

Name : Sph21_1638 (Sph21_1638)
Accession : YP_004316870.1
Strain : Sphingobacterium sp. 21
Genome accession: NC_015277
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1999931 - 2000617 bp
Length : 687 bp
Strand : +
Note : KEGG: fjo:Fjoh_3918 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduc

DNA sequence : 
ATGGTAAAAATATTGCTGATAGAAGATGACAGGCGCTTGGCTAGTTTTATTCGAAAGGGATTGGAGGAACAGCTTTTCTC
CGTATCATGTGTTTCGAGCGGCTACGAAGCCCTGGCAGTGACGCAAGATATTTACTTTGATCTGATTATACTGGATATCA
TGCTTCCCGACGTATCCGGATTCCAGATATGCACTGCTATTCGCGAACGAAAAATTACAAGTCCTTTAATTATTTTGAGC
GCTTTGGATAATCCGGAGGAAAAGGTAAAAGGACTCCAGGCAGGAGCGGATGATTACCTCGGAAAGCCTTTTCATTTCGA
AGAGCTACTTGCACGCATTAACGCGCAATTACGACGAAAATCTTTTGAAAAAGGTATTCTGGATGTACAAAAATACGCAG
ATCTTGAAGTCAATATTGCGGAACAGGGAGCAAAACGTGCCGGGAAGAATATTCTGCTTTCACCTCGTGAATATAAGCTT
TTACTATTCCTGCTAAACAATCGAGAACGAGTGGTTTCCCGCACGCAGATTGCAGAAGCGGTATGGGATATCCATTTTAA
TACGCATACCAATGTGGTAGATGTATATATTAATTATCTGCGAAATAAAATTGATAAGGGCTTTGCCGCGCCCCTCATCC
ATACTGTGAAGGGGAGGGGGTACATGCTTAAACAAAAAGAAGAATGA

Protein sequence : 
MVKILLIEDDRRLASFIRKGLEEQLFSVSCVSSGYEALAVTQDIYFDLIILDIMLPDVSGFQICTAIRERKITSPLIILS
ALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKSFEKGILDVQKYADLEVNIAEQGAKRAGKNILLSPREYKL
LLFLLNNRERVVSRTQIAEAVWDIHFNTHTNVVDVYINYLRNKIDKGFAAPLIHTVKGRGYMLKQKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-41 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-41 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator BAC0111 Protein 4e-43 43
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 2e-32 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 7e-38 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-41 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-42 42
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-37 41
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-41 45
Sph21_1638 YP_004316870.1 winged helix family two component transcriptional regulator VFG1389 Protein 7e-34 41