Gene Information

Name : Marme_3993 (Marme_3993)
Accession : YP_004315037.1
Strain : Marinomonas mediterranea MMB-1
Genome accession: NC_015276
Putative virulence/resistance : Virulence
Product : iron-chelate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.34
Position : 4402390 - 4403133 bp
Length : 744 bp
Strand : -
Note : PFAM: ABC transporter-like; KEGG: hch:HCH_01396 cobalamin/Fe3+-siderophores ABC transporter ATPase; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGGTTCGTCAGGAGCGTATCATTTTGGCATTGCCTGAACTGAATATACCGACAAATAAGTTGGTCGCTATTATTGGGCA
TAATGGTTCAGGGAAAAGCACCCTGATGAATGTGTTGGCTAGACAGAGTCTGCTTGATTCGGGTGATATTCTGCTTGACG
GCGTTTCTCTAAGCCAATTATCGAATAAAGCATTAGCGCGGCGAATTAGCTTCTTACCGCAGGGGATTCCCAGCGCAGCA
GGGCTTACGGTCAGCGAGTTGGTTGCACTCGGACGTTACCCATGGAGAGGGGCATTCGGGCGTTTAGATGAAACCGATCA
TCAGATTATTGCACGAGCCATAGAGCAAGTTGATTTACAGGGCTACGAGCATAAAATTACCGATGACTTATCCGGTGGTG
AGCGTCAGCGTGCATGGATTGCCATGCTTTTAGCGCAACAGTCTCCGATTCTATTGTTGGACGAGCCGACTTCTGCCTTA
GATATCGCGCATCAATACGAGTTGATGAATCTGCTCCACTCCCTAAATCGTCAGCATGAGCAAGGTGTGATTGTTATATT
GCACGATATTAATCTGGCTGCGCGTTATGCCGATCATATTATAGCGCTTCAGCAAGGGCGGTGCTTTTATCAGGGGGCGC
CTGAAGAGTTGATGAACAAAGAAAAGCTCGTTGATCTGTACGGTATTCCTATGACGGTAACCCCACATCCCAATCATGAA
TCTAAGGTGGCCTTAGTATGTTAA

Protein sequence : 
MVRQERIILALPELNIPTNKLVAIIGHNGSGKSTLMNVLARQSLLDSGDILLDGVSLSQLSNKALARRISFLPQGIPSAA
GLTVSELVALGRYPWRGAFGRLDETDHQIIARAIEQVDLQGYEHKITDDLSGGERQRAWIAMLLAQQSPILLLDEPTSAL
DIAHQYELMNLLHSLNRQHEQGVIVILHDINLAARYADHIIALQQGRCFYQGAPEELMNKEKLVDLYGIPMTVTPHPNHE
SKVALVC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-41 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-41 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-36 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-36 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-36 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-36 42
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marme_3993 YP_004315037.1 iron-chelate-transporting ATPase BAC0164 Protein 4e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marme_3993 YP_004315037.1 iron-chelate-transporting ATPase VFG0925 Protein 5e-38 44
Marme_3993 YP_004315037.1 iron-chelate-transporting ATPase VFG1042 Protein 4e-37 41