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Name : Marme_3520 (Marme_3520) Accession : YP_004314569.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Resistance Product : Fis family PAS modulated sigma-54 specific transcriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 3870386 - 3871801 bp Length : 1416 bp Strand : + Note : KEGG: gct:GC56T3_1561 PAS modulated sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS DNA sequence : ATGTCATTAAAAAAACTAGAAAAACTCTCGCAGGCAGCCAACACTTATAAAGCCATTTTGAATGCGATGGAAGAATGGGT CGTTATTGTCGACCATCAATCAAAGATTTTCTTCATCAACCGACCTTATGCACGCTTTCTTGGTGTGAAGGCGGAGGATG TAAAGGGGAAAAAGGTCACCGACGTCATTGAAAACACTCGGATGCACATTACTGTGCAGACAGGCCAAGCGGAACGATTT TCTTTTCAGAAGATTTTAGGCAGTAAAATGATTGCTAGCCGTCTCCCTATCGTTGATCAAGGCGAGGTCATTGGTGCCGT TGGTACGGTGATTTTTCATGATACTCATGAATGGAAACAAATTAACAGCCATATAAAAGCACTGCTAGCCGAACAAGACT TTCAATACCAAAAAAGCATCGCTTCCGACAAACTCAACACAGGCGCTAATTTTCACCTAAATGACATCATCGGTGACAGT CAGGTGATGAAGTCTTTGAGCGCTAAGGTCACACAAGTGGCTTCTGGTGATGTAACAGTATTAATTCGTGGCGAATCAGG AACCGGCAAAGAATTGTACGCCCACGCCATCCACCAGCTGTCAGATCGAGCGGAATATCCATTTATCAAAGTTAATTGCG CCGCGATACCAGAAAGTTTGCTAGAAAGTGAATTATTTGGCTATGAAGAAGGCGCATTTACAGGTGCCAAAAAAGGCGGC AAGCCGGGTAAATTTCAATTGGCCAATGGCGGCACCTTGTTTCTCGACGAGATCGGCGATTTACCATTATTAATGCAAGC CAAACTACTGCGTGTATTACAAGATCGTGAAGTCGAATCCGTTGGTGGCACGCAACCCATGCCCTTAAACATTCGGCTGA TTACCGCCACACATCGTCCATTAGAAAGCCTGATAGAAAGTGGCGCCTTCCGAGGAGACCTTTATTATCGTATTAACGTC GTGGCGATTGATTTGCCACCACTTCGTGAGCGTCGTGGAGACATTGCAAAACTGGCTGATTTTTTCCTGCAAAAACTGTC GAGAAGAACTGGTCGACGTGCGCCAAAGCTCACCGTTCAAGCTTTGACAGCCATGATAGCCTACAACTGGCCGGGTAATA TTCGCGAACTCGAAAATGTCATTGAAGCGGCGTTTTACACAAGCCATGATCGAAAAATCCCGCTGTCATTATTGCCAGCG CAACTGTCCCAAACAGATCACAGCACACCTAAAAATCAGACGTCAAAAGGGATCATTCAATCCACAGGCAGCTTAAAAGA ACAACTGAACCTAGCAGAGAAAAATATCATTAACGCCGCTTTGATTGAATGTGGCGATAACCGTACCAAAGCCGCCAAAA AGTTGGGCATCAGTAAATCCACTTTTTACGAAAAGCTCGATAAACACGGCATATAG Protein sequence : MSLKKLEKLSQAANTYKAILNAMEEWVVIVDHQSKIFFINRPYARFLGVKAEDVKGKKVTDVIENTRMHITVQTGQAERF SFQKILGSKMIASRLPIVDQGEVIGAVGTVIFHDTHEWKQINSHIKALLAEQDFQYQKSIASDKLNTGANFHLNDIIGDS QVMKSLSAKVTQVASGDVTVLIRGESGTGKELYAHAIHQLSDRAEYPFIKVNCAAIPESLLESELFGYEEGAFTGAKKGG KPGKFQLANGGTLFLDEIGDLPLLMQAKLLRVLQDREVESVGGTQPMPLNIRLITATHRPLESLIESGAFRGDLYYRINV VAIDLPPLRERRGDIAKLADFFLQKLSRRTGRRAPKLTVQALTAMIAYNWPGNIRELENVIEAAFYTSHDRKIPLSLLPA QLSQTDHSTPKNQTSKGIIQSTGSLKEQLNLAEKNIINAALIECGDNRTKAAKKLGISKSTFYEKLDKHGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 2e-47 | 41 |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 2e-47 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Marme_3520 | YP_004314569.1 | Fis family PAS modulated sigma-54 specific transcriptional regulator | BAC0467 | Protein | 1e-64 | 47 |
