|
Name : Marme_3256 (Marme_3256) Accession : YP_004314308.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 3576396 - 3577769 bp Length : 1374 bp Strand : - Note : KEGG: mmw:Mmwyl1_3461 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal DNA sequence : GTGCAAGACGACGACAGTGTAGCCAGCATTAAACTTCCACCATACTCAATTGAAGCCGAAAGGTCCGTTGTAGGCGGCTT GATGCTTGATCCTGAAGCTTGGGATCGAGTGTCTGAATTGGTTGTAGCAGATGATTTTTATCGCCCTGAGCATAACCGTA TTTTCTCCGTCATAGCAAAACTCGCGGATGAAGTTGAGCCTATCGATGTAGTAACTATCGGTGAGCGTCTAGACAAGCGC GGCGAGCTTGAAGATGTGGGCGGCATGGCGTATCTCATTGAAATGGTTGAGGCGACACCCAGTGCTGCGAATATTGCGTC GTATGCGGATATCGTTAGAGAGAGAGCGTTATTAAGGCGTTTGATTTCAACGACAAATGAAATCACCGATAGAGCATTTC ACCCAGAAGGCATGAACGCCGCTGAGGTGCTTGATGAAGCTGAGCGAAAAATCTTTCAGATAGCAGAAGGTGGTGAGAAA AAAGGCGGGCCTAGAGAGGTTGCGGACATTCTAAGCGCTACCGTCGACAAGATCGATGAGCTTTATCACCAGGAAGGGTC AATTACGGGGTTGAGTACGGGTTTTACGGATTTAGATGCAATGACGTCAGGTTTACAGCCAGCTGACTTAGTTATTGTTG CCGGTCGACCTTCAATGGGTAAAACTACATTCGCGATGAACTTGGTTGAAAATGCCGCTATGATCAGCGAACTTCCTGTT ATCGTATTCAGTCTAGAGATGCCCGCAGAGCAGTTGATGATTCGTATGCTGTCATCGTTAGGGCGAATAGATCAAACTCG AATGAGGTCAGGCCAACTTATACAGGAAGACTGGGATAAGTTGATGTCGGCTGTAAAAATGCTGAAAGATAGAAAGCTAT TTATAGATGATACGGGCGGGATTAGCCCCACTGAGATGCGATCTCGTGTCAGGCGTATTGCCCGAGAGCATGGAGGCGTT GCATTGATCATGGTCGATTACCTTCAATTGATGCAGATTCCTGGTTTTACAGAAGGGCGTACCAATGAAATTTCTGAGAT CTCTCGATCTCTTAAAGCGATTGCTAAAGAAATGAGTTGCCCTATGGTTGCACTGTCTCAGCTTAACCGTAGTTTGGAGC AAAGACCAAATAAGCGCCCAGTAAACTCAGATTTGCGTGAATCTGGAGCGATAGAGCAGGATGCGGATGTTATTTCTTTC GTCTATCGTGATGAGGTATATCACGAAGATACGCCTTACAAAGGCATTGCTGAGATTATTATCGGTAAGCAGCGTAATGG TCCGATCGGAACATGTCGATTGGCGTTCGTGGGTAAGCATACTCGGTTTGAGGATTTGTCTCCCGATGCTTATCAAGATT TTGGTGACGATTAA Protein sequence : MQDDDSVASIKLPPYSIEAERSVVGGLMLDPEAWDRVSELVVADDFYRPEHNRIFSVIAKLADEVEPIDVVTIGERLDKR GELEDVGGMAYLIEMVEATPSAANIASYADIVRERALLRRLISTTNEITDRAFHPEGMNAAEVLDEAERKIFQIAEGGEK KGGPREVADILSATVDKIDELYHQEGSITGLSTGFTDLDAMTSGLQPADLVIVAGRPSMGKTTFAMNLVENAAMISELPV IVFSLEMPAEQLMIRMLSSLGRIDQTRMRSGQLIQEDWDKLMSAVKMLKDRKLFIDDTGGISPTEMRSRVRRIAREHGGV ALIMVDYLQLMQIPGFTEGRTNEISEISRSLKAIAKEMSCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVISF VYRDEVYHEDTPYKGIAEIIIGKQRNGPIGTCRLAFVGKHTRFEDLSPDAYQDFGDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 3e-110 | 53 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 4e-94 | 52 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 7e-95 | 51 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 9e-96 | 50 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-94 | 50 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 5e-93 | 49 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-88 | 44 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-88 | 44 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 3e-75 | 43 |
