Gene Information

Name : Marme_2105 (Marme_2105)
Accession : YP_004313189.1
Strain : Marinomonas mediterranea MMB-1
Genome accession: NC_015276
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 2309694 - 2309873 bp
Length : 180 bp
Strand : +
Note : PFAM: prophage CP4-57 regulator; KEGG: svo:SVI_1340 DNA-binding protein

DNA sequence : 
ATGCGAGTCATGAAATTAAACGAAGTCATCAACACAACTGGGCTTTCTAGATCGTCAATCTATGCTTACATGTCAAAGGG
CAATTTCCCAAAACCCATTCAGCTAGGACCTAGGGCCGTCGCTTGGATTGAAGAGGAAGTTCATAAATGGCTATGTGATA
AGATCAGCCAGAGAGGGTAA

Protein sequence : 
MRVMKLNEVINTTGLSRSSIYAYMSKGNFPKPIQLGPRAVAWIEEEVHKWLCDKISQRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 1e-10 53
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 1e-10 53
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 1e-10 53
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 5e-12 47
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 5e-12 47
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 3e-12 47
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 4e-11 46
unnamed CAA21398.1 - Not tested HPI Protein 6e-11 46
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 2e-11 45
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 3e-09 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marme_2105 YP_004313189.1 phage transcriptional regulator, AlpA VFG1118 Protein 4e-11 53
Marme_2105 YP_004313189.1 phage transcriptional regulator, AlpA VFG1141 Protein 1e-12 47