Gene Information

Name : Marme_1423 (Marme_1423)
Accession : YP_004312526.1
Strain : Marinomonas mediterranea MMB-1
Genome accession: NC_015276
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1588183 - 1589478 bp
Length : 1296 bp
Strand : +
Note : KEGG: mmw:Mmwyl1_0207 TRAP dicarboxylate transporter subunit DctM; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGAGTTTTGAATTTTCCCTTTGTCTGCTGGTGGTTTTCTCTCTCGCGGCGTTTGGAGCACCCATTGCAATTTCAATGAT
AGTAGGTGCCATCGCGTATTTGGCTGCAAGTGGTCAAGATATTGCGTTAGCGGGTGAGCAAATTATTCAAGGCATATATG
GCAGCTTTATTTTGCTTGCTGTTCCCTTATTTATTGTCGCTGCTAACATCATGAATGCTGGGACAATCTCCGAGCGTCTA
CTGAACTTTTGTGTCGCTGTTGTTGGGCATTTACGCGGCGGATTGGGCCATGTCAATGTTGTTTCAAGTTTGATCTTCTC
TGGAATGTCGGGTTCCGCAGTAGCGGATGCCGCAGGCGTTGGCAAAGTTGTTATTGAAATGATGGTCAAAGGCAACCGCT
ACCCACCCGGGTACGCTGCTGCGATTACTGCTGCTTCTGCGACGATCGGCCCCATCATTCCTCCTTCTATTCCGATGGTT
ATTTACGCGTTGGTCTCGGATGTATCTATTGGTTATCTCTTTATTGCAGGCTTGGTGCCAGGCTTGTTTATGGGTATGGT
GTTAATGGCGTTTAACGCCTACCAAGCTCGCAGACTTAACATTGCCAAAGAGCCAAGAACGCCAACAAAAGACATCCCAA
AGGTCGCTTGGCAGGCTTTTCCGGCTTTAATGATGCCGGCCATCTTGCTGTATGGTATCTACGGCGGGGTAACGACACCA
ACAGAAGCCGCAGCGGTAGCGGCTGCGTACGCTTTGTTGTTGGCTGCGACCGTATATCGTTCCATCACACTTAAAGAGCT
GGCTAATGTCTTTAAGCAAAGTGCGTTGTCGTCTGCTTCCGTCGGTTTGGTTATAAGTGCAGCGCTTATTTTCAATTACA
TCGTATCGACAGAAAATATTCCTACGGCGGTCGCGAATACCTTAGTTGCTTGGGATCTTTCGCCTTTGCAATTTATGCTT
GCCATCAACGTTTTGTTTTTATTGCTAGGGTGTTTGCTGGATACGGCGACGGTTGTGCTTGTCATCGTTCCATTGCTTAT
TCCTGCGTGTCGGGAGCTGGGTATTGATCTGGTGTATTTTGGCGTGGTGACATTGGTTAACTTGATGATTGGTATGATCA
CTCCTCCTTACGGCATATTGTTGTTCGTGATTAATGGTACGACTCGTATTCCGCTGGCGGATATTATCAAAGGTGTTATT
CCGTTCACGGGTGTGCTGTTGTTTGCACTGGCAATTATGACGCTCTTTCCTGATTTGATTTTGTTCGTCCCACGGCTGTT
TGGGTATATGGGGTAG

Protein sequence : 
MSFEFSLCLLVVFSLAAFGAPIAISMIVGAIAYLAASGQDIALAGEQIIQGIYGSFILLAVPLFIVAANIMNAGTISERL
LNFCVAVVGHLRGGLGHVNVVSSLIFSGMSGSAVADAAGVGKVVIEMMVKGNRYPPGYAAAITAASATIGPIIPPSIPMV
IYALVSDVSIGYLFIAGLVPGLFMGMVLMAFNAYQARRLNIAKEPRTPTKDIPKVAWQAFPALMMPAILLYGIYGGVTTP
TEAAAVAAAYALLLAATVYRSITLKELANVFKQSALSSASVGLVISAALIFNYIVSTENIPTAVANTLVAWDLSPLQFML
AINVLFLLLGCLLDTATVVLVIVPLLIPACRELGIDLVYFGVVTLVNLMIGMITPPYGILLFVINGTTRIPLADIIKGVI
PFTGVLLFALAIMTLFPDLILFVPRLFGYMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-30 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-30 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marme_1423 YP_004312526.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 7e-31 41