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Name : Marme_1071 (Marme_1071) Accession : YP_004312182.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Virulence Product : Yop virulence translocation R Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 1202432 - 1203085 bp Length : 654 bp Strand : - Note : KEGG: ddd:Dda3937_00615 type III secretion inner membrane protein; TIGRFAM: Yop virulence translocation protein R; PFAM: type III secretion system inner membrane P protein DNA sequence : ATGAACTTAGGAAATGTCGATCCGATGTTGTTCGCACTCTTTTTAGGTGCGCTCTCTCTGTTACCAATCATGTTAATCGT GTGCAGTGCCTTTCTGAAAATTTCTATGGTTTTGATGATTACCCGAAATGCAATGGGCGTGCAGCAAGTACCACCTAACA TGGCGATTTATGGCATCGCCTTAGCGGCGACCATGTTTGTTATGGCACCGGTTTTTAGCGATATCGGTAATAAAGTCAAA GAAACACCGCCTGACTTTTCGTCTCTGGAAGGCATGCAAACCAGCGCAAATAAGATCGTAGGTCCGTTACAGGCCTTTAT GAGCCGCAACAGCAATCCCGATGTAACAACACATATGATGGACAATACAGCGCGTCTTTGGCCCAAAGAAATGGCCAGCA AAGTCACAAAGGACGATCTGATGATAGTCATTCCATCTTTTATGTTATCTGAGCTTAAAGCCGGACTTCAGATTGGTTTT TTAATATACATTCCGTTCATTGTCATCGACCTTATCGTGTCCAATTTGCTTTTGGCATTGGGCATGCAAATGGTCTCGCC AATGACGATTTCCTTGCCTTTAAAAATCCTTCTGTTCGTTCTCGTCGATGGCTGGGGTCGATTGCTTGACGGCCTTTTTT ATACGTATATCTAG Protein sequence : MNLGNVDPMLFALFLGALSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSDIGNKVK ETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMASKVTKDDLMIVIPSFMLSELKAGLQIGF LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKILLFVLVDGWGRLLDGLFYTYI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 2e-63 | 70 |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 2e-63 | 70 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 2e-71 | 69 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 2e-71 | 69 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 2e-71 | 69 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-62 | 69 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 3e-62 | 69 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 2e-64 | 68 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-64 | 68 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 1e-68 | 67 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 3e-71 | 67 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 2e-42 | 47 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 4e-37 | 45 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 3e-39 | 44 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-40 | 44 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 3e-40 | 44 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-40 | 44 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 3e-40 | 44 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-40 | 44 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 3e-40 | 44 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 3e-40 | 44 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 3e-40 | 44 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 3e-40 | 44 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-39 | 44 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 4e-39 | 44 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-40 | 44 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-36 | 43 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-36 | 43 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-36 | 41 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 4e-36 | 41 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-36 | 41 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 2e-36 | 41 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-36 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0044 | Protein | 1e-46 | 49 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0188 | Protein | 6e-41 | 45 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0394 | Protein | 1e-41 | 45 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0827 | Protein | 2e-40 | 44 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0715 | Protein | 2e-39 | 44 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG1259 | Protein | 4e-29 | 42 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG1773 | Protein | 6e-34 | 41 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG0519 | Protein | 9e-37 | 41 |
| Marme_1071 | YP_004312182.1 | Yop virulence translocation R | VFG2338 | Protein | 5e-27 | 41 |
