Gene Information

Name : Marme_1070 (Marme_1070)
Accession : YP_004312181.1
Strain : Marinomonas mediterranea MMB-1
Genome accession: NC_015276
Putative virulence/resistance : Virulence
Product : type III secretion protein, HrpO family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1202158 - 1202418 bp
Length : 261 bp
Strand : -
Note : KEGG: ddc:Dd586_1881 type III secretion protein, HrpO family; TIGRFAM: type III secretion protein HrpO; PFAM: Bacterial export protein FliQ, family 3

DNA sequence : 
ATGGATACTTTAACGCTGTTTAAACAGGGGATGGTTTTAGTGGTCATGCTATCGGCGCCACCGTTAGTGGTCGCCGTTAT
TGTCGGGGTTGTCGTATCGCTTTTACAAGCCTTACTTCAAGTTCAAGACCAAACCCTTCCCTTTACAATAAAGCTGGTCG
CCGTTGTGGTCACGCTGGCCATTACCGGACGCTGGCTTGGTGTGGAAATCATCCAGTTCACAACACAAATGTTCAATCTC
ATCGCGACAGTGGGCCGTTAA

Protein sequence : 
MDTLTLFKQGMVLVVMLSAPPLVVAVIVGVVVSLLQALLQVQDQTLPFTIKLVAVVVTLAITGRWLGVEIIQFTTQMFNL
IATVGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 4e-12 71
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 4e-12 71
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 4e-13 70
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 3e-13 70
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 5e-13 70
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 4e-13 70
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 1e-11 69
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 2e-12 68
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 9e-12 66
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 9e-12 66
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 9e-12 66
lscS AAO18039.1 LscS Virulence TTSS locus Protein 0.011 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marme_1070 YP_004312181.1 type III secretion protein, HrpO family VFG2132 Protein 0.001 44