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Name : Marme_1067 (Marme_1067) Accession : YP_004312178.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Unknown Product : ECF subfamily RNA polymerase sigma-24 subunit Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 1198733 - 1199272 bp Length : 540 bp Strand : - Note : KEGG: eta:ETA_05230 sigma factor HrpL (hrp cluster); TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 DNA sequence : ATGGATACTTTGAATAGTTTCGAAAAAAATAATCAAAATAATAAAATAGACATAGCACACCTTCACTCTAATCAGAATGA AAAATTGAGACGCTTTATTAGTAAAAAAATATGGCATAAAGAAGATGCAGAAGAGGTTCTCCAATTCACTTATTTAGAAG CTATCCGCTGCCAACATAAGTTCATCGGCGACTCAAAACCGGAAACATGGTTGTTTGGCATTGCGGCCAATCTGACTAAA AATTATTTCAAACGTTATTACAATGCACCTGAACTCGAAGAAATGACAGAATCTCTCATAATGGACTTAGAGTCTGAGAT CGAAGCAGACCCTGCCATGCTCGTTGAACATGAAAACCTCCTTACAAAAACGGTTGATGCAATGAGTCAACTACCTAGCG ATACGCAATCAATCCTCGATATGGTGATAGAAAAAGACTTCAGCTATCAAGAAGCAGCCGATTCGATAGGCGTGCCAATT GGCACAATACGCTCCCGCCTTTCAAGAGCACGACAGCTGTTAAAACAATGTATTGCCTGA Protein sequence : MDTLNSFEKNNQNNKIDIAHLHSNQNEKLRRFISKKIWHKEDAEEVLQFTYLEAIRCQHKFIGDSKPETWLFGIAANLTK NYFKRYYNAPELEEMTESLIMDLESEIEADPAMLVEHENLLTKTVDAMSQLPSDTQSILDMVIEKDFSYQEAADSIGVPI GTIRSRLSRARQLLKQCIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpL | AAT96335.1 | HrpL | Virulence | S-PAI | Protein | 5e-36 | 49 |
| hrpL | ABA47271.1 | HrpL | Virulence | S-PAI | Protein | 4e-34 | 45 |
| hrpL | AAD24681.1 | sigma factor HrpL | Virulence | Hrp PAI | Protein | 2e-28 | 43 |
| hrpL | NP_791231.1 | RNA polymerase sigma factor HrpL | Virulence | Hrp PAI | Protein | 2e-28 | 42 |
| hrpL | AAG33875.2 | HrpL | Virulence | Hrp PAI | Protein | 1e-27 | 41 |
| hrpL | ABQ88350.1 | HrpL | Virulence | Hrp PAI | Protein | 3e-28 | 41 |
| hrpL | AAA17652.1 | putative alternate sigma factor | Virulence | Hrp PAI | Protein | 3e-28 | 41 |
