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Name : Marme_0987 (Marme_0987) Accession : YP_004312098.1 Strain : Marinomonas mediterranea MMB-1 Genome accession: NC_015276 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1113472 - 1114944 bp Length : 1473 bp Strand : + Note : TIGRFAM: type II secretion system GspE; PFAM: type II secretion system protein E; KEGG: psa:PST_0125 general secretion pathway protein E; SMART: ATPase, AAA+ type, core DNA sequence : TTGATCAGCCTCTCATACAGTTTTGTTAAAGAAAAAGGTGTTTTGTTGCTTGAGGATCATGAAGGTTGGCACCTTAAATA TCGATCTTCAGCAACACTGGCGGCGAAGTCGGAAGCGCGCCGTCTTGCACCAATCTCTCCTCATTTTGTCGAAATTTCCG ATACTGAGTTTGATGCTGAAGTCGTTCGTTTTTACCAGCGTGAAGGCGGCCAAACACTCGCAGATGCCGAAGGCATCGGT GATGATTTGGATTTAAGTTCGGTTGCAGAGTCGATCCCAGAGAACGAAGACCTACTCGAAAGTGAGGGCGATGCCCCTAT CATTCGGCTGATTAATGCCATCTTAAGTGAGGCGGTTAGGGAAGGCGCGTCGGATGTTCATGTCGAGACGTTCGAACGCC GATTGTTGGTGCGTTTTCGAGTGGATGGTGTATTACGCGAAATTATTCAGCCGAAGCGAGCATTAGCGCCTATGTTAGTG TCGCGTATAAAAGTCATGGCAAAACTCGATATTGCTGAGAAACGCATCCCTCAAGATGGGCGTATTGTCCTTCGCGTGTC GGGTCAGGAAGTCGACGTTCGTGTGTCTACTTTGCCTTCTACGCATGGTGAGCGTATCGTTATGCGCTTATTGTCCAAGC AAGCTGGTCGACTCGATCTCACGCATCTGGGGATGATTGATAAAGACCGTGAAACGCTGCGACAACTTATTTCACGCCCT CATGGTATTATCTTGGTGACGGGGCCGACAGGCTCTGGTAAAACAACCTCCCTGTATGCTTCTCTCGGTTATTTAAATGA TGGCCAGCGAAATATTATGACGGTCGAAGATCCCGTTGAATATCATATCGAAGGCATAGGGCAAACACAGGTTAATACCA AAGCGGATATGACCTTTGCTCGCGGTCTTAGGGCCATTTTGCGTCAAGATCCTGACGTGGTGATGATAGGTGAAATTCGA GATAAAGAAACCGCTGATATTGCTGTTCAGGCTTCCTTAACGGGGCATTTAGTGTTGTCTACACTCCATACAAACAGTGC TTCGGGTGCGATTACGCGATTACAAGATATGGGGGTAGAGCCCTACCTGCTTTCGTCTTCTGTTGTTGGTGTTATAGCGC AGCGTCTAGTGCGTAAATTATGCGACCACTGTAAAAAGCCCGAAATTGCCGATGAGGCAACCAAGGTTCTAATGAAGGTG TCGACAGATCAAGACGTGACTCATTATCACCCTGTTGGATGTGAACACTGTTTTGGTCAGGGTTATCGCGGTCGATTAGG TTTGTATGAAATACTGGAGATGGACGCAACGGTGCAGTCGCTTGTGCATTCACAGGCAGGTGAGCAAGCGTTAGAAAAAG CAGCGCGCGCTCGCCATGCTAGTTTACGAGATGACGGTATTCAAAAAGTATTGTTAGGCCATACAAGTTTAGAAGAAGTG CTTCGTGTCGCACACGAAGGCGGCAAAGATTAA Protein sequence : MISLSYSFVKEKGVLLLEDHEGWHLKYRSSATLAAKSEARRLAPISPHFVEISDTEFDAEVVRFYQREGGQTLADAEGIG DDLDLSSVAESIPENEDLLESEGDAPIIRLINAILSEAVREGASDVHVETFERRLLVRFRVDGVLREIIQPKRALAPMLV SRIKVMAKLDIAEKRIPQDGRIVLRVSGQEVDVRVSTLPSTHGERIVMRLLSKQAGRLDLTHLGMIDKDRETLRQLISRP HGIILVTGPTGSGKTTSLYASLGYLNDGQRNIMTVEDPVEYHIEGIGQTQVNTKADMTFARGLRAILRQDPDVVMIGEIR DKETADIAVQASLTGHLVLSTLHTNSASGAITRLQDMGVEPYLLSSSVVGVIAQRLVRKLCDHCKKPEIADEATKVLMKV STDQDVTHYHPVGCEHCFGQGYRGRLGLYEILEMDATVQSLVHSQAGEQALEKAARARHASLRDDGIQKVLLGHTSLEEV LRVAHEGGKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-132 | 62 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-132 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Marme_0987 | YP_004312098.1 | general secretory pathway protein E | VFG0182 | Protein | 3e-145 | 62 |
| Marme_0987 | YP_004312098.1 | general secretory pathway protein E | VFG2048 | Protein | 3e-130 | 60 |
| Marme_0987 | YP_004312098.1 | general secretory pathway protein E | VFG1876 | Protein | 4e-137 | 56 |
| Marme_0987 | YP_004312098.1 | general secretory pathway protein E | VFG2426 | Protein | 1e-76 | 48 |
| Marme_0987 | YP_004312098.1 | general secretory pathway protein E | VFG0112 | Protein | 6e-88 | 44 |
