Gene Information

Name : Clole_4121 (Clole_4121)
Accession : YP_004310993.1
Strain : Clostridium lentocellum DSM 5427
Genome accession: NC_015275
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 4540036 - 4540515 bp
Length : 480 bp
Strand : -
Note : KEGG: cbt:CLH_3342 rRNA large subunit methyltransferase; TIGRFAM: ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted

DNA sequence :
ATGAAGATAGAAATCATATGTGTAGGCAAACTTAAAGAAAAATATTTGGTACAAGCTATTAATGAGTATAGTAAAAGACT
AAGTCGTTACTGTAAATTAAGTATCATTGAATTAGCAGATGAAAAAACACCAGATAATGCTTCTGAAAAAGAAGAATTAC
AAATCAAAGAAAAAGAAGGCGAAAAAATTCTATCTAAAATCAGTGATAGTGCTTACGTTGTAGCATTAGATTTGAATGGA
AAGATGCTCTCATCTGAAGAACTCGCAAGTTTTATGGCAGACTGTGGTGTAAGAGGTAACAGTCATATTGTATTTGTCAT
TGGAGGGTCACTTGGCTTATCAGATGCCGTAAGACAAAGAGCAAATTATAAGCTTTGCTTCTCAAAAATGACATTCCCAC
ATCAGCTATTTAGAGTCATGCTATTAGAGCAGATTTATAGAGGGTTCAGGATTAATAATAATGAACCGTATCATAAGTAA

Protein sequence :
MKIEIICVGKLKEKYLVQAINEYSKRLSRYCKLSIIELADEKTPDNASEKEELQIKEKEGEKILSKISDSAYVVALDLNG
KMLSSEELASFMADCGVRGNSHIVFVIGGSLGLSDAVRQRANYKLCFSKMTFPHQLFRVMLLEQIYRGFRINNNEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 9e-45 60
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-44 59
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-44 59
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-44 59
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-44 59
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-44 59
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-44 59
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-44 59
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-44 59
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-44 59
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-44 59
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-44 59
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-44 59
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-43 58
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 4e-43 57
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-43 57
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-39 56
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 1e-28 56
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-43 55