Gene Information

Name : Clole_3064 (Clole_3064)
Accession : YP_004309958.1
Strain : Clostridium lentocellum DSM 5427
Genome accession: NC_015275
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3321522 - 3322196 bp
Length : 675 bp
Strand : +
Note : KEGG: swo:Swol_2177 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction

DNA sequence : 
ATGAATCTATTAGTTATAGAAGATGAGGTCCGCTTAGCAGAAGCCTTAGTTCAGATTTTACAAAAAAACAAATATGCAGC
CTTAGCAGCTTATGATGGTATTACTGGCCTTGATCATGCTTTAACAGGTATCTATGATGTCATTATACTAGATATTATGC
TCCCTAAATTAAATGGTTTAGAAGTCCTTAAACAACTTAGAGAACAAAAGATTCAAACACCTGTTATTTTACTTACTGCC
AAAGATGAAGTATCTGATAGGGTTAAGGGCCTTGACCATGGTGCTGATGATTATCTCACCAAACCCTTTGCTACTGATGA
ACTTTTAGCACGTATAAGAGCACTCGGTAGAAGACGTGGTGAACTTATTTGTGACGATACGCTTCATTTTGAAGATATTT
CATTAAACCTTTCTACTTATGAACTCAGCTGTGGAAGTAAAACCGTTCGTTTAGGACTCAAAGAATTTCGCATCTTAGAG
TTTCTTATTCGCCATGGCCAACATATTGTAAGCAAAGAAGAACTACTTGAAAAAATATGGGGCTTTGATTCAGAAGCTGA
ATATAATCATGTAGAGGTTTATATTTCTTTTCTTCGCAAAAAACTTTCTCATATTCATTCAAAGGTAGGTATTCAAACAG
TTCGTGGTGTCGGCTATCGTTTAGGAGGTGAATAA

Protein sequence : 
MNLLVIEDEVRLAEALVQILQKNKYAALAAYDGITGLDHALTGIYDVIILDIMLPKLNGLEVLKQLREQKIQTPVILLTA
KDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRRRGELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILE
FLIRHGQHIVSKEELLEKIWGFDSEAEYNHVEVYISFLRKKLSHIHSKVGIQTVRGVGYRLGGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clole_3064 YP_004309958.1 transcriptional regulator AE015929.1.gene1106. Protein 1e-29 44
Clole_3064 YP_004309958.1 transcriptional regulator NC_002952.2859858.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_007622.3794948.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_003923.1003417.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_013450.8614146.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_002951.3238224.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_007793.3914065.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_002758.1121390.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator NC_010079.5776364.p0 Protein 8e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator HE999704.1.gene1528. Protein 3e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clole_3064 YP_004309958.1 transcriptional regulator VFG1390 Protein 9e-34 43
Clole_3064 YP_004309958.1 transcriptional regulator VFG0596 Protein 5e-28 42