Gene Information

Name : Clole_0019 (Clole_0019)
Accession : YP_004306979.1
Strain : Clostridium lentocellum DSM 5427
Genome accession: NC_015275
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 26730 - 27443 bp
Length : 714 bp
Strand : -
Note : KEGG: ckr:CKR_1885 hypothetical protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regula

DNA sequence : 
TTGTTTATTTATAAAGAGGGTGATTTTATCAAACGTATATTAATCATTGAAGATGAGGTAAAAATTGCACGTTTTCTTCA
GTTAGAACTCCAGCATGAAGGCTATGACGTTAATATGTCTCATGATGGACGCGAAGGCCTTAATATGGCACTTGAAAATA
ACTATGATCTACTTATTTTAGATGTTATGCTTCCTTCTTTAAATGGTATGGAAGTTTTAAGGCGTATTAGACAAGTTTCA
AGTTTGCCTGTTATTATGCTAACAGCTAAAGATGATGTCATGGATAAAGTAATGGGACTAGATTTAGGGGCACAAGATTA
CATAACTAAACCTTTTGCCATCGAAGAACTTTTAGCAAGAATCCGTGTACTTTTTAAATTAAAAGCTACTACTCCAACTG
CTACTCCTGAAGTTCTTAAATGTGGCCAGTTAACTTTGGATCCAGAACGTTATGAGGTAAGCTATAATAATATTCCTTTA
GCGCTTACCAAAAAGGAATTCGAATTACTTCAATTCCTTATGCTGAATAAAAACTTACTTATTACTAGAGAACAAATTCT
CGAAAAGGTATGGGGATATGACTATTTAGGGGATACTAATGTTGTAGATGTTTATATCCGTTACTTAAGAAATAAAATTG
ACCAAAGGTTTGAAGATAAATTAATTTATACGGTTAGAGGAATGGGGTATCAAATAAAAGATGGAGAAAGCTAA

Protein sequence : 
MFIYKEGDFIKRILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGMEVLRRIRQVS
SLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKATTPTATPEVLKCGQLTLDPERYEVSYNNIPL
ALTKKEFELLQFLMLNKNLLITREQILEKVWGYDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQIKDGES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-41 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clole_0019 YP_004306979.1 transcriptional regulator NC_003923.1003417.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_013450.8614146.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_002951.3238224.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_007793.3914065.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_002758.1121390.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_010079.5776364.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_002952.2859858.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator NC_007622.3794948.p0 Protein 8e-47 53
Clole_0019 YP_004306979.1 transcriptional regulator AE015929.1.gene1106. Protein 6e-43 51
Clole_0019 YP_004306979.1 transcriptional regulator HE999704.1.gene1528. Protein 4e-45 51
Clole_0019 YP_004306979.1 transcriptional regulator BAC0308 Protein 2e-37 46
Clole_0019 YP_004306979.1 transcriptional regulator BAC0125 Protein 3e-39 46
Clole_0019 YP_004306979.1 transcriptional regulator BAC0197 Protein 3e-38 46
Clole_0019 YP_004306979.1 transcriptional regulator BAC0638 Protein 1e-38 44
Clole_0019 YP_004306979.1 transcriptional regulator BAC0083 Protein 5e-39 43
Clole_0019 YP_004306979.1 transcriptional regulator AE016830.1.gene1681. Protein 1e-41 43
Clole_0019 YP_004306979.1 transcriptional regulator NC_012469.1.7686381. Protein 2e-34 42
Clole_0019 YP_004306979.1 transcriptional regulator NC_012469.1.7685629. Protein 6e-39 42
Clole_0019 YP_004306979.1 transcriptional regulator AF155139.2.orf0.gene Protein 1e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clole_0019 YP_004306979.1 transcriptional regulator VFG0596 Protein 9e-42 46
Clole_0019 YP_004306979.1 transcriptional regulator VFG1390 Protein 2e-42 43