Gene Information

Name : SL003B_0980 (SL003B_0980)
Accession : YP_004302709.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1049741 - 1050553 bp
Length : 813 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGGCCCGACCCTCGAACTGGCCACCTGCGACGGCGCGGCCACCGGCGACGACAACGCCCCGGCGGCGCTGGCGAT
CCGCGCCATGACCGTCAGCTACGGCGACAAGCCGGCGGTGTTCTCGGTCGACGCCGAGATGCCGGCCGGCAGCATGACCG
CCATCGTCGGGCCGAACGGCGCCGGCAAGTCGACCTTGCTGAAGGCCGCGCTCGGCATCGTGCCGCGCCTGTCGGGCACG
GTGACCGTCCATGGGGAGCCGCTGCGCGCGGCGCGCCACCGCATCGCCTACGTGCCCCAGCGCGCCTCCGTCGACTGGGA
CTTCCCGACCCGCGCGCTCGATGTGGTGCTGATGGGCCTGTCGCGCGAACTCGGCCTGCTGCGCCCGGTCCGCGCCCGCC
ACCGCGAGCGGGCACGCGCCTGCCTGGAGCGGGTCGGCATGGCGGATTTCGCTGACCGCCAGATCGGTCAGCTGTCCGGC
GGCCAGCAACAGCGGGTGTTCCTGGCCCGCGCGCTGGCCCAGGATGCCGACCTCTACCTGCTCGACGAGCCCTTCGCCGG
CGTCGACGCGGCGACCGAACGCACCATCATCGACGTCCTCAAGTCGCTCAAGGCCGAGGGACGCACGGTCGTCTGCGTCC
ACCACGACCTGGCCACCGTCGCCGCCTATTTCGATCGCGTGCTGCTGATCAACCTGCGCAAGATCGCCGAGGGACCTGTC
GCCACGACCTTCACCGCGGCGACCTTGCAGGCAACCTACGGCGGCCGCCTCGCCGGCGCCCACATCGACCAGCTGAAGCT
GCCGGCGGCCTGA

Protein sequence : 
MSGPTLELATCDGAATGDDNAPAALAIRAMTVSYGDKPAVFSVDAEMPAGSMTAIVGPNGAGKSTLLKAALGIVPRLSGT
VTVHGEPLRAARHRIAYVPQRASVDWDFPTRALDVVLMGLSRELGLLRPVRARHRERARACLERVGMADFADRQIGQLSG
GQQQRVFLARALAQDADLYLLDEPFAGVDAATERTIIDVLKSLKAEGRTVVCVHHDLATVAAYFDRVLLINLRKIAEGPV
ATTFTAATLQATYGGRLAGAHIDQLKLPAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 7e-32 44
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-31 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-27 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-27 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-27 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-27 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 8e-28 44
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-16 44
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-16 44
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 4e-16 44
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 5e-16 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SL003B_0980 YP_004302709.1 ABC transporter BAC0400 Protein 1e-49 58
SL003B_0980 YP_004302709.1 ABC transporter BAC0350 Protein 5e-28 44
SL003B_0980 YP_004302709.1 ABC transporter BAC0440 Protein 4e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SL003B_0980 YP_004302709.1 ABC transporter VFG0526 Protein 5e-28 44