Gene Information

Name : istB (SL003B_0640)
Accession : YP_004302369.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Unknown
Product : IS20 family transposase IstB-like protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 679813 - 680418 bp
Length : 606 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGAACGGGATCGCCGCAAGGTCGAACGCCGCATCAAGGCGGCGAGGTTCCCGGTCGTCAAAAGCCTCGACAGCTT
CGACTTCGCCGCTATCCCGAAGCTCAACAAGATGCAGGTGCTGGAGCTGGCCCGCTGCGAATGGGTCGAGCGGCGCGAGA
ACGTCATCGCGCTTGGCCCCAGCGGCACGGGCAAGACCCATGTGGCGCTCGGTCTCGGTCTGGCCGCCTGCCAGAAGGGC
TTGTCCGTCGGCTTCACGACCGCCGCTGCCCTGGTCAGCGAGATGATGGAGGCGCGCGACGAGCGACGTCTGCTGCGTTT
CCAGAAGCAGATGGCAGCCTACAAGCTCCTGATCATCGACGAACTGGGCTTCGTGCCATTGTCAAAGACCGGGGCGGAAT
TGCTGTTCGAGCTGATCGCGCAACGCTACGAACGCGGTGCCACCCTGATCACCAGCAATCTGCCATTCGACGAATGGACC
GAGACGCTGGGATCGGAACGGCTGACCGGCGCACTGCTCGACCGGCTGACCCACCACGTCAACATCCTCGAGATGAACGG
CGACAGCTATCGTCTCGCTCAAAGCCGCGCCCGAAGGGCAGGCTGA

Protein sequence : 
MIERDRRKVERRIKAARFPVVKSLDSFDFAAIPKLNKMQVLELARCEWVERRENVIALGPSGTGKTHVALGLGLAACQKG
LSVGFTTAAALVSEMMEARDERRLLRFQKQMAAYKLLIIDELGFVPLSKTGAELLFELIAQRYERGATLITSNLPFDEWT
ETLGSERLTGALLDRLTHHVNILEMNGDSYRLAQSRARRAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-35 42
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-35 42
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-35 42
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-35 42
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 3e-35 42
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-35 42
unnamed CAA21402.1 - Not tested HPI Protein 3e-35 42
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-35 42
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 5e-35 42
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-35 42
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 3e-35 42
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 3e-35 42
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 6e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
istB YP_004302369.1 IS20 family transposase IstB-like protein VFG1515 Protein 1e-35 42
istB YP_004302369.1 IS20 family transposase IstB-like protein VFG1627 Protein 1e-35 42
istB YP_004302369.1 IS20 family transposase IstB-like protein VFG1606 Protein 1e-35 42
istB YP_004302369.1 IS20 family transposase IstB-like protein VFG1663 Protein 2e-35 42
istB YP_004302369.1 IS20 family transposase IstB-like protein VFG1460 Protein 3e-33 41