Gene Information

Name : SL003B_0525 (SL003B_0525)
Accession : YP_004302254.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 552231 - 553091 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence :
GTGAGATACGCGTTCGTTGCCGAGCATCGCCAGCAGTTCACGGTTCGGGCGATGTGTCGTTGCCTGTGCATCCAGCCCAG
CGGTTTCTACGCCTGGCTGAAGACCCCCCTGAGCAGGCGAACTCGGGAAGACGCACGTCAGACCGAGCTTCTCAGCAAGG
CCTGGAAGGAGAGCGGCAGGGTCTACGGCTATCGCAAGCTGCACGACGACCTTCTCGATCAGGGAGAGACCAGTTGCGCC
AACCGCATCGCTCGTCTGGCAAAACTGGCCGGGATCAAGGCGCAGATCGGCTACAAGCGCCGGCCTGGCTCCTATGGCGG
CAAGCCGTCGGTCGTCGTCGACAACACCCTTGCCCGGCAGTTCGATGTCGAAGCGCCGGACAGGGCGTGGGTGACTGACA
TCACCTACATCCGGACCCAGGAGGGCTTTGCCTATCTGGCGGTGGTGATCGATCTGTTTTCACGCCGCGTCATCGGCTGG
TCACTGCAGAGCCGCCAGACCACCGATGTCGTGTTGCAGGCATTGCTGATGGCGGTGTGGCGTCGAAAGCCCAAGAGCAG
GGTTCTGGTCCATTCCGATCAGGGATCGCAGTTCACCAGCATGGACTGGGCAGCGTTCCTGAAGCACCACAATCTTGAGC
ACTCGATGAGCCGTCGCGGCAACTGCCACGACAATGCCGTGGCGGAGAGCTTCTTCAATCTCCTCAAGCGCGAGCGGATA
CGGCGCAGGACCTACCGAACACGCGAGGAGGCAAGGCAGGACGTGTTCGACTACATCGAGATGTTCTACAATCCAAAGCG
AAAGCACGTCAGGAACGGGATGCTGTCACCCGTCGAGTTCGAACGGCAGCACGAAATGTAA

Protein sequence :
MRYAFVAEHRQQFTVRAMCRCLCIQPSGFYAWLKTPLSRRTREDARQTELLSKAWKESGRVYGYRKLHDDLLDQGETSCA
NRIARLAKLAGIKAQIGYKRRPGSYGGKPSVVVDNTLARQFDVEAPDRAWVTDITYIRTQEGFAYLAVVIDLFSRRVIGW
SLQSRQTTDVVLQALLMAVWRRKPKSRVLVHSDQGSQFTSMDWAAFLKHHNLEHSMSRRGNCHDNAVAESFFNLLKRERI
RRRTYRTREEARQDVFDYIEMFYNPKRKHVRNGMLSPVEFERQHEM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-33 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-42 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-42 43
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 5e-30 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-43 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 8e-42 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 4e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SL003B_0525 YP_004302254.1 integrase catalytic subunit VFG1631 Protein 6e-44 42