Gene Information

Name : fliI (SL003B_3849)
Accession : YP_004305574.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Virulence
Product : H(+)-transporting ATP synthase, flagellum-specific protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 4170621 - 4171943 bp
Length : 1323 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCGGCTTGATCGTCTGGCGCTGGCGGTGGCCGGCGCACGCAAGGAAGTCGACCCCGTCCGCATCGGCGGTCGCGT
CACCCAGGTCACGCCGGGTTCAGTCCGCATCTGCGGCCTGTCGCGATCCGTCTGTCTCGGCGATCTCGTGGTTTTGTCGG
GCAAGGGCGGCGAGCGGCGCAGCGAGATCATCCGGCTCGACGAACAGGATGTGCTGGTCAAGCCGTTCGACAGCCATGTC
GACATCGCAATCGGCGCCCGCGCGTTTCGCAAGGGCAGCCTGACCATCCATCCGCACGAAAGCTGGAAGGGGCGCGTCAT
CGATGCCCTTGGCCATCCCGCCGACGATCGCGGCGTGCTGCGGCCTGGGCCGGCGGCGATGCTGCCCGACTGCGATCCGC
CGGCCACGCTCGAACGCGCTCGGATCCGCAAGCCGGTCCGGACCGGCGTCCGCGTCATCGATCTGTTCACGCCCCTGTGC
GTGGGGCAGCGCATCGGCATCTTCGCCGGCTCGGGTGTCGGCAAGTCAACCCTGCTCGCCATGCTGGCCGGTTCGGGCGA
TTTCGACACGGTCGTCGTCGGCCTGGTCGGCGAACGCGGACGCGAGGTGCGCGAGTTTGTCGAGGATGTCCTCGGTGAGG
CCCGCGAGCGGTCGGTCGTGGTGGTCGCCACGGGCAACGAGAGCGCCATGATGCGCCGCCTTGCGCCGAAGACGGCGATG
GGCGTCGCAGAATATTTCCGCGACCTCGGGCAATCGGTGCTGCTCATCATCGATTCGGCCACCCGCTTCGCCCATGCGGC
GCGCGACGTCGCCATGGCGGCGGGCGAGCCGCCTGTCGCCCGCGGCTATACCCCCAGCGTGTTTTCCGATCTGACGCGGC
TGCTGGAGCGGGCCGGACCGGGGGGAGAAGGCAAGGGGGCCATTACCGGCATCTTCTCGGTGCTGGTCGACGGCGACGAC
CACAACGATCCGGTCGCCGATACCCTGCGCGGCGTGCTCGACGGCCACATCGTGCTCGACCGATCGATCGCCGACGCCGG
CCGCTACCCGGCCGTGGATGTGCTGAAGTCCGTGTCGCGCCTGTCGCAGCACGCGTGGAGCGCGGAGGAACGCGAACTGA
TCCTCCGGCTCAAGGCGATGATCTCGCGCTTCGAGGACACGCGCGACCTGCGACTCATGGGCGGCTACCAGCCCGGCAGC
GATCCTGCCCTGGACAAGGCCTGCACCCTTGTGCCGAGGATCTACGAGGCCCTACGGCAGGACGCGAGATCGGCACAGGT
GGGCGATCCGTTTGCCGATCTGGCGCGGGCGCTGTCGGCGTGA

Protein sequence : 
MNRLDRLALAVAGARKEVDPVRIGGRVTQVTPGSVRICGLSRSVCLGDLVVLSGKGGERRSEIIRLDEQDVLVKPFDSHV
DIAIGARAFRKGSLTIHPHESWKGRVIDALGHPADDRGVLRPGPAAMLPDCDPPATLERARIRKPVRTGVRVIDLFTPLC
VGQRIGIFAGSGVGKSTLLAMLAGSGDFDTVVVGLVGERGREVREFVEDVLGEARERSVVVVATGNESAMMRRLAPKTAM
GVAEYFRDLGQSVLLIIDSATRFAHAARDVAMAAGEPPVARGYTPSVFSDLTRLLERAGPGGEGKGAITGIFSVLVDGDD
HNDPVADTLRGVLDGHIVLDRSIADAGRYPAVDVLKSVSRLSQHAWSAEERELILRLKAMISRFEDTRDLRLMGGYQPGS
DPALDKACTLVPRIYEALRQDARSAQVGDPFADLARALSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-51 45
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-51 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 5e-51 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 4e-50 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-50 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-51 44
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-51 44
lscN AAO18044.1 LscN Virulence TTSS locus Protein 6e-52 43
escN AAC38383.1 EscN Virulence LEE Protein 7e-49 43
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-48 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-48 43
escN AAC31513.1 L0034 Virulence LEE Protein 2e-48 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-48 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-48 43
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-41 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 3e-41 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-41 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-41 42
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-47 42
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-47 42
escN AAK26715.1 EscN Virulence LEE Protein 2e-47 42
escN AAL57542.1 EscN Virulence LEE Protein 2e-47 42
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-47 42
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 4e-47 42
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-47 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-40 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-40 41
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-39 41
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-54 41
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-54 41
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-39 41
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-38 41
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG1254 Protein 5e-50 45
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0192 Protein 3e-53 44
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0390 Protein 4e-52 44
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0515 Protein 3e-51 44
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0048 Protein 5e-54 43
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG2331 Protein 2e-50 43
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0730 Protein 4e-49 43
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG0812 Protein 1e-48 43
fliI YP_004305574.1 H(+)-transporting ATP synthase, flagellum-specific protein VFG2144 Protein 3e-54 41