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Name : ragA (SL003B_2901) Accession : YP_004304628.1 Strain : Polymorphum gilvum SL003B-26A1 Genome accession: NC_015259 Putative virulence/resistance : Virulence Product : response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 3129485 - 3130168 bp Length : 684 bp Strand : - Note : - DNA sequence : ATGCGGATCCTGATCATCGAGGACGACAAGCAGGCTGCAGCCTATCTCGCCAAGGGGCTGCGCGAGGTCGGCCATGTCGC CGACCATGCCGCCGACGGCGAGGAGGGGCTGGAGCGCGCCCTCGACGGAGACTATGACGTGATGATCGTCGACCGGATGC TGCCGCGCCGCGACGGCCTGTCGGTCATCGAGGCGTTGCGCAAGGCCGGCGACCACACGCCGGTGCTGATCCTGTCGGCG CTCGGCCAGGTCGACGACCGCGTCACCGGACTGCGGGCGGGCGGCGACGACTACCTGCCCAAGCCTTTCGCCTTCACCGA GCTGCTGGCGCGGATCGAGGCACTCGGCCGGCGCCCGAAGGCGTCGGGAGAGACGGAGACGGTGTACCGGGTCGCCGACC TGGAACTCGACCGCCTGACCCATCGCTGCAGCCGCGCCGGCAAGGACATTCCCCTGCAACCGCGCGAGTTCCGCCTGCTC GAATACCTGATGCAGCATGCCGGGCAGGTGGTCACCCGCACCATGCTGCTGGAGAACGTCTGGGAGTATCACTTCGACCC GCAGACCAACGTCATCGACGTCCACATCTCCCGCCTGCGCGCCAAGATCGACAAGGATTTCGACAGGCCGCTGCTGCACA CGATCCGCGGCGCCGGATATTCGATCCGTGACGCCGCTGTCTAG Protein sequence : MRILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGLSVIEALRKAGDHTPVLILSA LGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPKASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLL EYLMQHAGQVVTRTMLLENVWEYHFDPQTNVIDVHISRLRAKIDKDFDRPLLHTIRGAGYSIRDAAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 8e-41 | 44 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 7e-40 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0125 | Protein | 2e-47 | 50 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0347 | Protein | 7e-48 | 49 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0308 | Protein | 3e-47 | 48 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0083 | Protein | 1e-49 | 48 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0111 | Protein | 1e-52 | 47 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0197 | Protein | 6e-46 | 47 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | BAC0638 | Protein | 3e-42 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | VFG1389 | Protein | 2e-35 | 45 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | VFG0596 | Protein | 3e-41 | 44 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | VFG1390 | Protein | 4e-41 | 42 |
| ragA | YP_004304628.1 | response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain | VFG0473 | Protein | 1e-28 | 41 |
