Gene Information

Name : SL003B_2589 (SL003B_2589)
Accession : YP_004304316.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2766456 - 2767286 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence : 
GTGAGATACGCGTTCGTTGCCGAGCATCGCCAGCAGTTCACGGTTCGGGCGATGTGTCGTTGCCTGTGCATCCAGCCCAG
CGGTTTCTACGCCTGGCTGAAGACCCCCCTGAGCAGGCGAACTCGGGAAGACGCACGTCAGACCGAGCTTCTCAGCAAGG
CCTGGAAGGAGAGCGGCAGGGTCTACGGCTATCGCAAGCTGCACGACGACCTTCTCGATCAGGGAGAGACCAGTTGCGCC
AACCGCATCGCTCGTCTGGCAAAACTGGCCGGGATCAAGGCGCAGATCGGCTACAAGCGCCGGCCTGGCTCCTATGGCGG
CAAGCCGTCGGTCGTCGTCGACAACACCCTTGCCCGGCAGTTCGATGTCGAAGCGCCGGACAGGGCGTGGGTGACTGACA
TCACCTACATCCGGACCCAGGAGGGCTTTGCCTATCTGGCGGTGGTGATCGATCTGTTTTCACGCCGCGTCATCGGCTGG
TCACTGCAGAGCCGCCAGACCACCGATGTCGTGTTGCAGGCATTGCTGATGGCGGTGTGGCGTCGAAAGCCCAAGAGCAG
GGTTCTGGTCCATTCCGATCAGGGATCGCAGTTCACCAGCATGGACTGGGCAGCGTTCCTGAAGCACCACAATCTTGAGC
ACTCGATGAGCCGTCGCGGCAACTGCCACGACAATGCCGTGGCGGAGAGCTTCTTCAATCTCCTCAAGTGTGCACTTAAC
CTTCTTTCCGTGCTATCGTTGGAAAGGAGGAAGATCCCATGGGACAATCATCAACAGCAAGGCAGGCCTCGCCTCGTGAT
GCCGCCAGCAAGGTGGCGCAGCAGCGTTTGA

Protein sequence : 
MRYAFVAEHRQQFTVRAMCRCLCIQPSGFYAWLKTPLSRRTREDARQTELLSKAWKESGRVYGYRKLHDDLLDQGETSCA
NRIARLAKLAGIKAQIGYKRRPGSYGGKPSVVVDNTLARQFDVEAPDRAWVTDITYIRTQEGFAYLAVVIDLFSRRVIGW
SLQSRQTTDVVLQALLMAVWRRKPKSRVLVHSDQGSQFTSMDWAAFLKHHNLEHSMSRRGNCHDNAVAESFFNLLKCALN
LLSVLSLERRKIPWDNHQQQGRPRLVMPPARWRSSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 6e-39 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 8e-37 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-37 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SL003B_2589 YP_004304316.1 integrase catalytic subunit VFG1631 Protein 3e-39 43