Gene Information

Name : SL003B_2546 (SL003B_2546)
Accession : YP_004304273.1
Strain : Polymorphum gilvum SL003B-26A1
Genome accession: NC_015259
Putative virulence/resistance : Virulence
Product : polysaccharide ABC transporter ATPase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 2717148 - 2717804 bp
Length : 657 bp
Strand : -
Note : -

DNA sequence : 
ATGATGATTGCGCTGGACCGCATCTTCAAATTCTACAAGACCTACGGCGTCACCAAGGTCGTGCTCGATCACGTCTCGAT
GACCTTCGAGTTCGGTAACAGCTACGGCGTGCTCGGCATCAACGGCGCCGGCAAGTCGACGCTGATGCGCCTGCTTGCCG
GGACGGAACTGCCCAACGACGGCAAAATCACTCGAAGCGTGCGGGTCTCCTGGCCACTCGGCTTTGCCGGCGGCCTGCAT
CCCAAGATGACCGGTCGCGAGAACGTCGTCTTCGTCGCCCGCATCTATGGGCACGATACGATCAAGACGCTTAATTTTGT
CGAGGATTTCGCCGAGATCGGCAGTTATATCGACGTTCCCGTCCAGTCCTATTCGTCGGGCATGCTGCAACGCCTGGCCT
TTGGGCTGTCCATGGCCATCGATTTCGATTGCTACCTGATCGACGAGGTCACAGCCGTCGGTGACGCACGGTTCCAGGCG
CGTTGTCAGCAGGAGTTCAACAAGAGGCGCCAATATTCGGACATAGTTATGATTTCTCATGATATGAATACGTTGAAACA
GTATTGCAATCGGGGGGTTGTGCTTGCTGATGGGAAGCTCCATCTCTTCCGGGATTTGGAGGACGCCATCGCCCTTTACC
GAAAACTGAACCGGTAG

Protein sequence : 
MMIALDRIFKFYKTYGVTKVVLDHVSMTFEFGNSYGVLGINGAGKSTLMRLLAGTELPNDGKITRSVRVSWPLGFAGGLH
PKMTGRENVVFVARIYGHDTIKTLNFVEDFAEIGSYIDVPVQSYSSGMLQRLAFGLSMAIDFDCYLIDEVTAVGDARFQA
RCQQEFNKRRQYSDIVMISHDMNTLKQYCNRGVVLADGKLHLFRDLEDAIALYRKLNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 4e-46 46
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-45 45
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SL003B_2546 YP_004304273.1 polysaccharide ABC transporter ATPase VFG0258 Protein 2e-46 46
SL003B_2546 YP_004304273.1 polysaccharide ABC transporter ATPase VFG2563 Protein 7e-50 45
SL003B_2546 YP_004304273.1 polysaccharide ABC transporter ATPase VFG1449 Protein 4e-46 45
SL003B_2546 YP_004304273.1 polysaccharide ABC transporter ATPase VFG0696 Protein 5e-47 44