|
Name : YE105_C3834 (YE105_C3834) Accession : YP_004300031.1 Strain : Yersinia enterocolitica 105.5R(r) Genome accession: NC_015224 Putative virulence/resistance : Virulence Product : Fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4422559 - 4425096 bp Length : 2538 bp Strand : + Note : - DNA sequence : ATGAAAACCATTTACTGCCCAGTTGGGCGGCTAATGACATTGGCTCTTTGGCTTGCCACTTTGTTGGGGGGGGCCTCTGC AAGTGTGCGGGCCGAAGAGCACTTTAACTCGGCATTGCTGGAAATTGATAACCAGCAACAAAGCCACACTGATCTATCGG TGTTTGAGCAGGAGCCGAATCAAGCATCCGGCACCTATCGTGTCGACATTTATATCAATAATGAGCTGTTGGATACTCGT GATGTGGTGTTTAGCATGCAAAAAAATGCCGTAGGTAAAGAGAGCCTCCAGCCCTGCCTGAGTGCCAAAGCATTGGCGGA GATTGGGGTTAAAATTGAAGCTTTCCCACAACTGGGGGATGGTGAGTGTGCGGATCTTAGCGCTATTCCGCAGGCCAGTG CCGAGTTTCGTTTGAGTGCGCAGCAGTTGTTGATCCGTATCCCGCAGGCAGCCATCACCGACAAAGCGCGTGGCTATGTA GAACCCAGCCAATGGGATGATGGTATTACGGCGTTGTTACTTAATTACAGTGTCAGTGGTGCGCAAAATAACCCCCGTAA TAGCAAAAATAATGATAGCAATAGCCAATATGCCAACCTGCGGCCCGGCTTTAACATTGGCCCGTGGCGACTGAGTAGCT ATATCACCTGGAATCGCAGTAGTGGCCGTCAGGACCAGTGGGACACCGTGTATACCTATGTACAGCGCAATATTATTGCA TTGAAGAGTCAGTTGATTTTTGGTGATAGCAATTCGCTGACCGATGTGTTCGATGGTGTGCCATTTCGTGGCGTGCAACT GGCTTCTGATGATGACATGGTGCCCGATAGCTTGAAAGGGTATGCGCCAGTGGTACGTGGTATAGCCCATAGCAATGCTG AAGTGACTATCCGTCAGAATGGTTATGTCGTTTATCAACATTTTGTCGCACCAGGTGCATTTGAAATCACAGATATGTTT CTAACGGGTACCAGTGGTGATCTCTATGTAACGGTAAAAGAAGCGGATGGCAGCGAACAACTGATTGTGGTGCCTTTTGC TTCCTTACCGGTATTACAGCGGGAAGGGCGACTGAAATATGCACTCACCGGTGGACAATATCGTTCCTACAACAGCCGTA TCGAGAGAACTCCCTTTGTGCAAGGCACGGGCATCTATGGATTGCCTTATGGCATAACAATTTATGGTGGTATTCAGGGC GCGAGTCGCTATCAATCTTTAGCTTGCGGCCTGGGAGATAATCTGGGGACGTTGGGTGCGGTATCAGTGGATGTCACACA TGCCCAAGCCACCATGCAAAACCAACCACAGAGAAGTGGCCAATCTCTGCGGACTCGATATAGCAAGAATATAGCACAAA CAGGAACCAACATTGCCATTGCGGGTTACCGCTACGCAACCGCAGGTTATTACAACTTGCAAGAGACGCTGGATAGTTAT CGTAAAGGTCAGAATACCGCCCTGGCAGAGCGTCGCCGCAATCGTGCTGAGGCGACCATGACTCAGAGTTTGTGGCAGGA AATCGGTTCAGTGTCACTTAGTTTAGTGAATGAGGGTTACTGGAACAGTAATCGACGCCTGCAATCCTACGGAGTGGGCT ACAACAACAGTTGGCACAAGGTTAGCTATGGTGTGAATTACAGCTATAACCTTAATTTTATGGCCAGTAGTGCAGGTAGC GGTAAAAAATATGGAAAAGATCAGGTCATTGCTTTCAATATCAGTGTGCCATTAGCCATTTTACTGGGTAACACTTATGC CAGTTACACCATGAATACCAGCAAGAAGGGGAGTACCACTCATATTGCTGGCCTAAAGGGTACCGCACTGGCTAGTAATA ATCTGAGCTGGAGTGCACAGCAAGGTTATGGTAGCCAGAGGCAAGGTAATAGCGGCAATCTGGCTGCGGATTATCGCGGT ACCTATGGTGAAATTAACGCAGGTTATGCCTATGACAATGACATGCAGCGAGTGAACTATGGGGTACAGGGTGGGATAGT GGCGCACAGAGATGGTGTTACCTTTGGTCAACCATTAGGTGAAACTATCGCGCTGGTTAAAGCTCCGGGAGCAAAGGCGG TGGAACTGAGCAGCCAGAATGGAGTGAAAACCGATTACCGCGGCTATGCCATTGTGCCTTACATCAGTCCTTACCGTAAA AATAAGATAGCACTGAACAGTGCGACGCTTTCGGATGATGTGGAGCTTAACCAGAATACCCAGAATGTGGTGCCGACGCG TGGTGCGGTAGTACGAGCCAGCTTTGTTACCCAGATCGGTGGGCGTGCGATGATGACGCTACTGCGCCCTGATGGAGCAC CAGTGCCATTTGGTGCCACCGTGAGCGATATGGCTACCAAGGGCCAGGGTTTTATTGTCGGTGATACCGGGCAGGTTTAT CTAACCGGGTTGGCAGACAGCGGCCAATTAATTGTGAAATGGGGCCATGACACCTCGCAGCAGTGCCATGTGGATTATTC CCTCTCTGGAAAAATAGAAACAAATAGCGTTCAGATGCTACACGGACAGTGTGGGTAA Protein sequence : MKTIYCPVGRLMTLALWLATLLGGASASVRAEEHFNSALLEIDNQQQSHTDLSVFEQEPNQASGTYRVDIYINNELLDTR DVVFSMQKNAVGKESLQPCLSAKALAEIGVKIEAFPQLGDGECADLSAIPQASAEFRLSAQQLLIRIPQAAITDKARGYV EPSQWDDGITALLLNYSVSGAQNNPRNSKNNDSNSQYANLRPGFNIGPWRLSSYITWNRSSGRQDQWDTVYTYVQRNIIA LKSQLIFGDSNSLTDVFDGVPFRGVQLASDDDMVPDSLKGYAPVVRGIAHSNAEVTIRQNGYVVYQHFVAPGAFEITDMF LTGTSGDLYVTVKEADGSEQLIVVPFASLPVLQREGRLKYALTGGQYRSYNSRIERTPFVQGTGIYGLPYGITIYGGIQG ASRYQSLACGLGDNLGTLGAVSVDVTHAQATMQNQPQRSGQSLRTRYSKNIAQTGTNIAIAGYRYATAGYYNLQETLDSY RKGQNTALAERRRNRAEATMTQSLWQEIGSVSLSLVNEGYWNSNRRLQSYGVGYNNSWHKVSYGVNYSYNLNFMASSAGS GKKYGKDQVIAFNISVPLAILLGNTYASYTMNTSKKGSTTHIAGLKGTALASNNLSWSAQQGYGSQRQGNSGNLAADYRG TYGEINAGYAYDNDMQRVNYGVQGGIVAHRDGVTFGQPLGETIALVKAPGAKAVELSSQNGVKTDYRGYAIVPYISPYRK NKIALNSATLSDDVELNQNTQNVVPTRGAVVRASFVTQIGGRAMMTLLRPDGAPVPFGATVSDMATKGQGFIVGDTGQVY LTGLADSGQLIVKWGHDTSQQCHVDYSLSGKIETNSVQMLHGQCG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 7e-141 | 42 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 7e-141 | 42 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-142 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YE105_C3834 | YP_004300031.1 | Fimbrial biogenesis outer membrane usher protein | VFG0454 | Protein | 3e-161 | 43 |
| YE105_C3834 | YP_004300031.1 | Fimbrial biogenesis outer membrane usher protein | VFG0446 | Protein | 1e-148 | 43 |
| YE105_C3834 | YP_004300031.1 | Fimbrial biogenesis outer membrane usher protein | VFG0876 | Protein | 6e-151 | 41 |
