Gene Information

Name : YE105_C0338 (YE105_C0338)
Accession : YP_004296539.1
Strain : Yersinia enterocolitica 105.5R(r)
Genome accession: NC_015224
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 408396 - 409046 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
ATGGAGTTACTGAATTCGTCCTCTCAATTGATTGTCCTGCTTTTTCTTCTGTCATTACTCCCCTTGCTGATGGTGATGGG
AACATCGTTTCTCAAACTATCGATTGTTTTCTCATTGCTGCGAAATGCATTAGGGGTGCAGCAAGTGCCGCCCAATATTG
CCATTTACGGTTTGGCGCTGGTGTTAACCATTTTTATCATGGCTCCGGTCGGATTGGATGTACATGCCCGCCTACAGGAT
GAGCCGTTACCCAATGATCTCGGTGCTTTGCTATATCATATTGACGAGCATGCGCTGGAGCCATATCGCGATTTTTTACA
ACGAAATACCGATGCAGCACAGGTTCATTTTTTCAATGACATCGTCCAAACCAAGTGGCCGGTACGCTATCGCGACACTA
TCAAACCCAACTCGCTGCTGATATTAATGCCCGCTTTTACCCTGAGCCAACTAACTGAAGCCTTTAAAATTGGCTTACTG
CTTTACTTGCCCTTTGTGGCGATTGATTTGATTGTCTCTAATATTTTGCTGGCAATGGGCATGATGATGGTATCTCCCAT
TACGATTTCATTACCATTCAAGTTATTAATTTTCATACTTATTGATGGCTGGGGATTGTTGCTGGGGCAGTTAGTGGGAT
CTTACTTATGA

Protein sequence : 
MELLNSSSQLIVLLFLLSLLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQD
EPLPNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILMPAFTLSQLTEAFKIGLL
LYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-77 84
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-56 61
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-55 61
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-55 61
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-55 60
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-55 60
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-53 59
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-47 56
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-47 56
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-47 56
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-47 56
escR AAC31528.1 L0049 Virulence LEE Protein 2e-47 56
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-47 56
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-47 56
escR AAK26700.1 EscR Virulence LEE Protein 2e-47 56
escR AAL57527.1 EscR Virulence LEE Protein 2e-47 56
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-47 56
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-47 56
escR AAC38369.1 EscR Virulence LEE Protein 2e-46 55
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-44 54
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-44 54
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-46 54
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-38 48
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-38 48
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-38 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 6e-35 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-39 48
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-37 48
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-33 48
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-33 48
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-35 48
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-33 48
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-33 48
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 48
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 48
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 48
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-39 47
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-39 47
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-39 47
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-39 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-37 46
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-31 46
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-31 46
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-31 45
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-31 45
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 4e-38 43
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 9e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0519 Protein 3e-56 61
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0188 Protein 1e-51 56
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0827 Protein 1e-47 56
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0394 Protein 5e-49 55
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0715 Protein 8e-47 55
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0044 Protein 6e-43 51
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG0551 Protein 5e-32 46
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG2455 Protein 1e-34 42
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG1012 Protein 2e-36 42
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG1773 Protein 2e-34 42
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG2338 Protein 9e-30 42
YE105_C0338 YP_004296539.1 type III secretion apparatus protein, YscR/HrcR family VFG1259 Protein 7e-31 42