Gene Information

Name : YE105_C0312 (YE105_C0312)
Accession : YP_004296513.1
Strain : Yersinia enterocolitica 105.5R(r)
Genome accession: NC_015224
Putative virulence/resistance : Virulence
Product : type III secretion outer membrane pore, YscC/HrcC family
Function : -
COG functional category : N : Cell motility
COG ID : COG1450
EC number : -
Position : 389880 - 391361 bp
Length : 1482 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAGAGCTTGCTGGTGCGCTACTGTTACTATTTATGTCCCAGGCCTCAGGGAAAGCCATTCCCTGGCAGGGGGAGCC
TTTTTTTATTTATAGCCGAGGCATGAAAGTCACTAACTTGTTGAATGATCTTGGGGTGAATTATGGTATCCCTGTGGTCG
TTAGCCCAGAAATAAATGAAAAATTTAGCGGTAAAATAGTGGATAAAACACCAGACCAAATACTGTCAGAATTGGCTGGG
CTATATAATATTACTTGGTACTACGATGGGGATATTCTCTATTTCTACAAAACTCAATCTATCAAAAGAGAGTTTATATC
TCCTGATGGGCTATCGACGGGGACCTTAATCAAATATTTAAAGCAAAGTGGTGTTCCCGCAGGTAAAAATTGCGCCGTAC
AGGCTGTTTCTCGCCTTAATGCAATTGAGGTCACAGGGGTACCTATCTGTATTGAACGTGTGACTTCTCTGACTAAAATG
CTCTCTTCGCAAGTGCGTAAGCAAAATCAAAATAAAGAAACAGTAAAAGTTTTTCAGTTAAAATATGCTTCTGCGGCTGA
CTCCACATATCAATATCGGGATCAACAAGTTCAGTTACCGGGTTTGGTCAGTGTCCTGCGGGAAATGAGTGCAGGTAACC
ATTTACCTTTGGCAGGCGAAAAAGAATCAGAGGATGCCCCTGTCAGCGCGCCACTTTTTTCGGCTGACCCTCGGCAAAAT
GCAGTTATTATCCGTGATCGCCAAGCGAACATGCCGCTGTATAGTAGTTTGATTACACAGTTGGATCAGCGGCCCGTCCA
AATAGAAATTTCTGTGACGATTATTGATGTTGATGCTGGGGATATCAGTCAGCTTGGTATCGATTGGTCAGCATCCACAT
CGATTGGTGGCGCTGGGGTTTCATTTAACAGTGGGGAGGCAGCACCTCATTCAGATGGATTCTCCACTGTGATAGGTAAC
ACCGGAAATTTTATGGTGCGCTTGAACGCCTTGCAAAAGAATTCGCGCGCCAGGGTTTTATCCCGCCCTTCAGTGGTTAC
CTTGAATAATATTCAAGCTGTACTAGACAAAAACGTGACTTTTTATACCAAGCTGCAAGGCGACAAGGTTGCAAAACTTG
AATCAATAACATCAGGTTCATTATTACGAGTCACACCGCGAATGATTGATTCTGACGGTGTGAAAGAAGTTTTACTTAAC
CTCAATATTCAAGACGGCCAACAGCAGGCACCACTCAGTAGTAGTGAACCTTTGCCTGAAATTCAAAATTCAGATATTTC
GACGCAAGCGACATTACGGGTTGGACAAAGCTTGCTCTTGGGTGGGTTTATTCAAGATAAACAAATTGAATCACAAAACA
AAATTCCTTTATTGGGTGATATCCCCTTACTCGGTGGATTGTTTCGCAGTACTAATAAGCAATCTCACAGTGTTGTCAGG
CTATTTTTAATCAAAGCCGTACCGGTTAATACAGGGGAATAA

Protein sequence : 
MKELAGALLLLFMSQASGKAIPWQGEPFFIYSRGMKVTNLLNDLGVNYGIPVVVSPEINEKFSGKIVDKTPDQILSELAG
LYNITWYYDGDILYFYKTQSIKREFISPDGLSTGTLIKYLKQSGVPAGKNCAVQAVSRLNAIEVTGVPICIERVTSLTKM
LSSQVRKQNQNKETVKVFQLKYASAADSTYQYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQN
AVIIRDRQANMPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGEAAPHSDGFSTVIGN
TGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLN
LNIQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHSVVR
LFLIKAVPVNTGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 0.0 79
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 1e-118 55
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 7e-119 55
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 5e-119 55
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 1e-118 55
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 2e-118 55
escC CAI43881.1 EscC protein Virulence LEE Protein 3e-111 50
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 4e-111 50
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 4e-111 50
escC AAC38377.1 EscC Virulence LEE Protein 2e-110 50
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 4e-111 50
escC AAK26708.1 EscC Virulence LEE Protein 3e-111 50
escC AAL57535.1 EscC Virulence LEE Protein 3e-111 50
escC CAC81855.1 EscC protein Virulence LEE II Protein 3e-111 50
escC AAC31520.1 L0041 Virulence LEE Protein 2e-111 50
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 2e-111 50
escC NP_290275.1 hypothetical protein Virulence LEE Protein 2e-111 50
ECs4575 NP_312602.1 EscC Virulence LEE Protein 2e-111 50
unnamed AAL06362.1 EscC Virulence LEE Protein 5e-111 49
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 1e-112 49
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 1e-112 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C0312 YP_004296513.1 type III secretion outer membrane pore, YscC/HrcC family VFG0495 Protein 3e-119 55
YE105_C0312 YP_004296513.1 type III secretion outer membrane pore, YscC/HrcC family VFG0723 Protein 9e-111 50
YE105_C0312 YP_004296513.1 type III secretion outer membrane pore, YscC/HrcC family VFG0819 Protein 1e-111 50