Gene Information

Name : YE105_C2844 (YE105_C2844)
Accession : YP_004299043.1
Strain : Yersinia enterocolitica 105.5R(r)
Genome accession: NC_015224
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3302103 - 3303266 bp
Length : 1164 bp
Strand : +
Note : -

DNA sequence :
ATGCTGCTAAATGACTTCAAAATCCGCTCCGCCAAGCCGACAGATAAGGCTTATACACTCAATGATGGCAAAGGCTTATC
ACTTATCATTTCCCCTAATGGGGTGAAAGGTTGGCGTTTTCGTTATCAATTTGGCGGCAAGGCTCATATGATTTCATTTG
GTGTCTATGGCCCCGTATCACTGGCTGATGCTCGTCGCCAACGTGAAGAAGCAAAATCAGCTTTAGCCAATGGCACCAAC
CCCAGTGATGCCCGTAAAGCGGAAAAGATTGCCTTAAAGTATCCGGCTAAAAATACCTTTGAAGATATTGCCCGCGAATG
GCACACCTCCAAACTTGCGACATGGACACCAGAATATGCGGATACGGTTATACGTGGCTTCGATAACAACGTATTTCCTT
ATATCGGTAAGCGCCCTATTGACCAGATAGCGCCGTTGGAACTGTTGGCCGTTCTGCAAAGAATCGAAAAACGTGGCGCA
CTGGAACTCACCGGAAAAATCAGGCGGCGCTGTGGTGAAGTATTCCGCTATGCCGTAGTTACCGGACGGGCTACTTATAA
CCCGGCCCCTGATTTGGCTAGCGCTTTGAACCGCCCCAAGAATGGCCATTACCCTTTCCTCACTGAAAGTGAGTTACCCG
AATTTATTCAGGCATTGGATAACTATAAAGGCAGCAAACAGACCAAATACGCCACCCAGTTGTTAATGCTCACGGGCGTA
AGAACTATAGAACTGAGAGCCGCTGAATGGTCTGAATTTGATCTGGATAATGCCTTGTGGGAGGTTCCCAAAGAAAGGAT
GAAAAAGCGCCGCCCTCACCTTGTGCCGCTTTCTAAACAAGCCTTGGCGATACTTGAAAAGCTAAAGGTGCTGACAGGGA
ATTATAAGTTAGTGTTCCCTGGCCGCAATGATGCTGGTAAGCCAATGAGTGAGGCGAGTATCAATAAGGTGATCAAGATG
CTGGGTTATCATGGCAGGGCCACCGGTCACGGTTTCCGGCACACCATGAGCACTATCTTGCATGAGAAAGGCTATAACAG
TGCATGGATTGAAACCCAGCTTGCGCACGTTGATAAAAATTCCATCCGTGGAACTTATAACCATGCGCAATATCTCGAAG
GGCGTAGGGAGATGTTGCAGTGGTATGGGGATAACTATTATTGA

Protein sequence :
MLLNDFKIRSAKPTDKAYTLNDGKGLSLIISPNGVKGWRFRYQFGGKAHMISFGVYGPVSLADARRQREEAKSALANGTN
PSDARKAEKIALKYPAKNTFEDIAREWHTSKLATWTPEYADTVIRGFDNNVFPYIGKRPIDQIAPLELLAVLQRIEKRGA
LELTGKIRRRCGEVFRYAVVTGRATYNPAPDLASALNRPKNGHYPFLTESELPEFIQALDNYKGSKQTKYATQLLMLTGV
RTIELRAAEWSEFDLDNALWEVPKERMKKRRPHLVPLSKQALAILEKLKVLTGNYKLVFPGRNDAGKPMSEASINKVIKM
LGYHGRATGHGFRHTMSTILHEKGYNSAWIETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYGDNYY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-120 64
int CAC39282.1 integrase Not tested LPA Protein 5e-120 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-120 61
int ACU09430.1 integrase Not tested LEE Protein 1e-120 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-120 61
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-120 61
int AAD44730.1 Int Not tested SHI-2 Protein 5e-118 61
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-119 61
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-118 61
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-118 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-118 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-115 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-73 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-73 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-73 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 4e-73 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-73 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-76 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-76 42
intA AAB00935.1 integrase A Not tested vap locus Protein 5e-57 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-71 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-73 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-73 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-73 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-73 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-73 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-73 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-72 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-73 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-72 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-73 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 6e-73 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 6e-73 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C2844 YP_004299043.1 Integrase VFG0783 Protein 7e-121 61
YE105_C2844 YP_004299043.1 Integrase VFG0598 Protein 1e-118 61
YE105_C2844 YP_004299043.1 Integrase VFG0626 Protein 1e-73 41
YE105_C2844 YP_004299043.1 Integrase VFG1693 Protein 1e-73 41