Gene Information

Name : YE105_C1981 (YE105_C1981)
Accession : YP_004298180.1
Strain : Yersinia enterocolitica 105.5R(r)
Genome accession: NC_015224
Putative virulence/resistance : Virulence
Product : periplasmic-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2286999 - 2287967 bp
Length : 969 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTATTAAGCAAAAAATACCCTACCTGCACTCTATTAGCGGCTTTACGCCTCGTTTTTTACATACCATGACCTTGTT
TACAGTCGTTGCAATTTCATTGCTGATGAACACCTCTGCATGGGCAGAAAACCAGCCAAACGATTCAGATAAAAAATTCA
AAATTGTGACAACGTTCACAATCATTCAGGATATCGCGCAAAATGTCGCCGGTGATGCTGCCATTGTTGAATCAATCACT
AAACCCGGTGCTGAAATTCATGACTATCAGCCGACCCCACGCGACATCGTGAAAGCACAGTCAGCAGACCTGATTTTATG
GAATGGCATGAATCTGGAGCGCTGGTTTGAGCGTTTCTTTGAAAATATTAAAGATGTTCCTTCGGCAGTGGTGACTGATG
GCATCACACCACTCCCCATTCGTGAAGGGCCTTATAAAGGCATTCCCAACCCTCATGCCTGGATGCCACCGTCAAACGCA
TTGATCTATATTGAAAATATTCGCAAGGCACTGGTCGAGCACGATCCTGCTCATGCTGAGACTTACAATCGCAATGCCAA
AACCTACGCAGAAAAAATTGCGGCATTGGATGCCCCGCTGCGCGAGCGTTTATCCCGAATTCCGCAAGAACAGCGCTGGC
TGGTCACCAGTGAAGGCGCTTTTAGCTATCTGGCAAAAGATTATGGCTTCAAAGAGGTTTATTTATGGCCAATCAATGCT
GAAGAGCAAGGCTCACCGCAGCAGGTGCGCCGTGTCATTGATACCATGCGCACCAATAAAATCCCGGTAATATTTAGTGA
AAGCACTATTTCTGATAAACCCGCCAGGCAGGTCAGCAAAGAAACCGGTGCGCAATACGGTGGGGTGTTATATGTTGATT
CTTTATCGAATGAGAAAGGACCCGTTCCTACTTATATCGATTTGATTAACACCACCGTGCAAACTATCGCGAAAGGATTT
GGTCAATGA

Protein sequence : 
MFIKQKIPYLHSISGFTPRFLHTMTLFTVVAISLLMNTSAWAENQPNDSDKKFKIVTTFTIIQDIAQNVAGDAAIVESIT
KPGAEIHDYQPTPRDIVKAQSADLILWNGMNLERWFERFFENIKDVPSAVVTDGITPLPIREGPYKGIPNPHAWMPPSNA
LIYIENIRKALVEHDPAHAETYNRNAKTYAEKIAALDAPLRERLSRIPQEQRWLVTSEGAFSYLAKDYGFKEVYLWPINA
EEQGSPQQVRRVIDTMRTNKIPVIFSESTISDKPARQVSKETGAQYGGVLYVDSLSNEKGPVPTYIDLINTTVQTIAKGF
GQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-90 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-90 59
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-90 59
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-90 59
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-90 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C1981 YP_004298180.1 periplasmic-binding protein BAC0439 Protein 2e-126 85
YE105_C1981 YP_004298180.1 periplasmic-binding protein BAC0349 Protein 1e-90 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C1981 YP_004298180.1 periplasmic-binding protein VFG0525 Protein 1e-90 59