Gene Information

Name : YE105_C1978 (YE105_C1978)
Accession : YP_004298177.1
Strain : Yersinia enterocolitica 105.5R(r)
Genome accession: NC_015224
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2284356 - 2285231 bp
Length : 876 bp
Strand : -
Note : -

DNA sequence : 
ATGAACACATTGTTCAGTCTGGTGAGCGAACCTTTCGCCTATCCTTTTATGCAACGGGCGATAGTCGCCGCGATTATCAC
CGGTGTGGTGTGCGCGGTGTTATCTTGCTACCTGGTATTAAAAGGTTGGTCATTAATGGGAGATGCCATCTCTCACGCCG
TGTTACCGGGCATAGTGTTGGCCTTTTGGCTCGGTATCCCATTGGTTATCGGTGCTTTTGTCTCGGGGATCTTTTGTGCG
GTCGCCACGGGCTACTTAAAAGAAAACAGTCGGGTTAAAGAAGATACCGTTATGGGGATTGTCTTCTCTGGCATGTTCGC
TTTCGGCCTGGTGCTATTTTCTCGCATGGATACCGATCAGCACCTGAGCCATATTTTGTTCGGTAATATGCTGGGTATTT
CGCTAGCGGAACTGAAGCAAACGCTGTGGATCGCCGGCTTCACATTGTTAGTTGTGCTATTAAAACGTAAAGCCTTCATG
CTGTACTGTTTTGACCCAAACCATGCCCGTGTCATTGGGTTACCGGTTAAGTTATTGCACTATGGTTTACTCTGTTTGCT
GGCATTAACTATCGTAGCTTCATTACAGGCGGTGGGGGTTATTTTAGTTATCGCTATGTTGATAGCACCCGGCATTATCG
CCTTTATGGTTTGTCGCAGTTTTGATCAAATGTTAGTTGTAGCTACTGTCGTTTCGGTGGTCGCATGCGTATTAGGCACC
TTAATAAGCTTCCATATTGATGGCGCTACAGGGCCTTGCATTGTCATTATTCAGGCACTGTTCTTTGTTATTGCGCTTAT
TTATAACCGTATATCCCCCAAAATAATTCGAGTTGCAGGAAGGCGGCCAGGGGATAATCCCGATGAGCTTACATGA

Protein sequence : 
MNTLFSLVSEPFAYPFMQRAIVAAIITGVVCAVLSCYLVLKGWSLMGDAISHAVLPGIVLAFWLGIPLVIGAFVSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRMDTDQHLSHILFGNMLGISLAELKQTLWIAGFTLLVVLLKRKAFM
LYCFDPNHARVIGLPVKLLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMVCRSFDQMLVVATVVSVVACVLGT
LISFHIDGATGPCIVIIQALFFVIALIYNRISPKIIRVAGRRPGDNPDELT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-56 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-56 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-55 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-55 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-55 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C1978 YP_004298177.1 chelated iron transport system membrane protein BAC0442 Protein 2e-109 92
YE105_C1978 YP_004298177.1 chelated iron transport system membrane protein BAC0352 Protein 2e-56 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_C1978 YP_004298177.1 chelated iron transport system membrane protein VFG0528 Protein 2e-56 55