Gene Information

Name : NAL212_1009 (NAL212_1009)
Accession : YP_004294089.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 925203 - 926408 bp
Length : 1206 bp
Strand : -
Note : PFAM: Integrase, catalytic core, phage; KEGG: rso:RSc1871 putative integrase prophage protein

DNA sequence : 
ATGCTTACCGATACCGCAATAAGAAACGCTAAACCTAGAGATAAATTTTATAAAGTAAGCGACAGTGGCGGGCTGTATTT
GCTGGTGAAAGCCACTGGGAAATATTGGCGCATGGATTATCGTTTTGTGGGCAAGCGTAAAACCTTGGCTATCGGTGTCT
ACCCCACTGTTTCTCTTGTTGCCGCTAGAAAAAAGCGAGATGAAGCGCGCGAATTGCTTGGAAAACATATTGACCCATCA
TTGGCCAAGGCCATCAATAAACGGATTGTACTCACTGCAGCAGAAAATACTTTCAAAGCTGTAGCGCTGGAATGGCACAC
AAAAACAAGCAAATCATGGGCAGAATCGACCGCAAACAATATCAAGCGCTATTTAGAAAAAGATATTTTTCCTTGGCTTG
GTAATCGTGCGATTAAAGATATTGGCGCACCAGATTTATTGGCAGTGTTGCGCAAGATCGAAAGCCGAGGGGCACATGAG
AAAGCTCAGCGTTGCCGGGAATATGCCGGGCGAGTGTTTAGATATGCCATAGCCACCGGACGCGCTGAACGCGATCCTAG
CGGCGATTTAAGAGGTGCGCTGACACCGGTCAAAGTCAAACACCATGCCAGCATAACCGAACCTAAAGCCATCGGCGCAT
TGCTACGATCAATCTGGGGATTTAATGGTTCTTACATAACCAAATGTGCATTGCAGCTTGCGCCATTGGTTTTTGTGCGA
CCCGGCGAACTACGGCAAGCAGAATGGCAAGAAATCGACTTTGACAAGCAAGAATGGCGTATAGCCGGAAATAAAATGAA
AATGGGTGAAGCGCACATTATCCCCCTGTCACCGCAAGTTATCGAGATTCTGCAATCAATCCATCCTTTAACCGGTGATG
GTCAATATATTTTCCCCAGTATACGTAGCAGTGCCCGGCCAATGTCTGAAAATACTATCAATGCAGCGTTAAGACGCATG
GGTTATGAAAAAGATGAAATGACAGGGCACGGTTTTCGCAGTATGGCCAGCACTTTGCTACATGAACATGGTTGGCCGCA
TGAAGCGATTGAAAGGCAATTAGCTCATGCAGAACGAAACAAGGTTGTGGCAGCTTATAACTATGCGGAGCACTTGCCTA
AACGCAAAGAGATGATGCGTTGGTGGGCGGATTATCTGGATGAATTGGCAGTGGGTGCCAAGGTAATTAATTTATCAAAT
ATTTAA

Protein sequence : 
MLTDTAIRNAKPRDKFYKVSDSGGLYLLVKATGKYWRMDYRFVGKRKTLAIGVYPTVSLVAARKKRDEARELLGKHIDPS
LAKAINKRIVLTAAENTFKAVALEWHTKTSKSWAESTANNIKRYLEKDIFPWLGNRAIKDIGAPDLLAVLRKIESRGAHE
KAQRCREYAGRVFRYAIATGRAERDPSGDLRGALTPVKVKHHASITEPKAIGALLRSIWGFNGSYITKCALQLAPLVFVR
PGELRQAEWQEIDFDKQEWRIAGNKMKMGEAHIIPLSPQVIEILQSIHPLTGDGQYIFPSIRSSARPMSENTINAALRRM
GYEKDEMTGHGFRSMASTLLHEHGWPHEAIERQLAHAERNKVVAAYNYAEHLPKRKEMMRWWADYLDELAVGAKVINLSN
I

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-80 46
int AAD44730.1 Int Not tested SHI-2 Protein 4e-78 46
int CAC39282.1 integrase Not tested LPA Protein 7e-79 46
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-79 46
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-76 45
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-78 45
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-78 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 8e-79 45
int ACU09430.1 integrase Not tested LEE Protein 8e-79 45
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-77 45
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-77 45
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-77 45
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-75 44
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-75 44
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-72 43
int AAK00456.1 Int Not tested SHI-1 Protein 4e-68 43
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-75 43
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-74 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-74 43
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-74 43
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-74 43
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-73 43
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-73 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-74 43
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-73 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-74 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-73 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-74 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-74 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-74 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-74 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-74 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 43
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-72 42
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-66 42
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-72 42
int CAC81896.1 integrase Not tested LEE II Protein 7e-67 42
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-74 42
int CAA08754.1 integrase Not tested HPI Protein 1e-66 41
int CAB59974.1 integrase Not tested HPI Protein 9e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_1009 YP_004294089.1 integrase family protein VFG0783 Protein 4e-79 45
NAL212_1009 YP_004294089.1 integrase family protein VFG0598 Protein 1e-77 45
NAL212_1009 YP_004294089.1 integrase family protein VFG0626 Protein 2e-75 44
NAL212_1009 YP_004294089.1 integrase family protein VFG1693 Protein 2e-74 43
NAL212_1009 YP_004294089.1 integrase family protein VFG1536 Protein 4e-66 42