Gene Information

Name : NAL212_0476 (NAL212_0476)
Accession : YP_004293583.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 360418 - 361164 bp
Length : 747 bp
Strand : -
Note : KEGG: net:Neut_2059 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence : 
ATGTCCCGATTGTTGCAAACAGTATTTTTCCTTGCTGGTTTTATTGCTCTGCCAGCATTTGCGCAGCAATCCGGCTTTCC
AGCATTTACCAGCACCGCTAATGCCGATGGAAGTGCAACCTATACGTTGAGCTTACAAACATTATTGTTGCTGACGTCAC
TGACATTCTTACCGGCCCTGGTATTAATGATGTCAAGCTTTACCCGCATTATCATTGTATTGTCATTGCTCAGAATGGCG
CTGGGCACGCAATCCTCCCCACCTAACCAAGTGTTGCTTGGACTAGCTTTGTTTCTAACTTTTTTCATTATGTCGCCGGT
TATCGACCGCGTTTATTCGGAAGCTTACCTGCCTTTTTCCGAAGATAAGATAAGCATCATGGAAGCGGCTGAGAAAGCGA
GCGTGCCATTGAAATCATTTATGCTGCATCAAACCCGGGAAACGGATTTGGCGCTTTTTGTGCAAATCTCCGAAAGTGAA
GAGCTTGAAAGCCGCGATCAAGTGCCGCTGAAAATACTTGTGCCGGCATATATCACCAGCGAATTGAAAACGGCATTCCA
GATCGGTTTTGTTATCTTCATCCCTTTTCTGATTATCGACTTGGTCGTCTCCAGCGTATTAATGGCGATGGGTATGATGA
TGCTCTCGCCCATGATTATTTCACTACCCTTTAAATTAATGCTTTTTGTTTTGGTCGATGGCTGGCATTTAATTATTGGC
TCATTGACCCAAAGCTTTTATACCTAA

Protein sequence : 
MSRLLQTVFFLAGFIALPAFAQQSGFPAFTSTANADGSATYTLSLQTLLLLTSLTFLPALVLMMSSFTRIIIVLSLLRMA
LGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYLPFSEDKISIMEAAEKASVPLKSFMLHQTRETDLALFVQISESE
ELESRDQVPLKILVPAYITSELKTAFQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLIIG
SLTQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-21 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-19 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-19 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-19 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-20 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-20 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-20 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-19 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-19 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-19 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-58 73
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-50 70
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-56 67
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-42 61
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-22 43
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-20 43
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG0394 Protein 9e-23 42
NAL212_0476 YP_004293583.1 flagellar biosynthetic protein FliP VFG0044 Protein 8e-25 42