Gene Information

Name : NAL212_2661 (NAL212_2661)
Accession : YP_004295614.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 2617327 - 2618241 bp
Length : 915 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: pst:PSPTO_B0040 ISPsy4, transposase

DNA sequence :
ATGTTGACTCAGGAGATATTAGTGGAAATTCATGTGTTACACCGGCAGGGCAAGAGCATTCGTTCGATAGCCAAAGCATT
AAACGTTTCACGCAATACCGTGCGTAAATACTTGCGCGATATTGCCAGAACACCGACCTACAGCAGACGGGATGATAGAC
CATCAAAACTTGAGCCGTTCAAGACCTATCTGCTTGAGCGAATTGAAGCAGCCAGACCAGAGTGGATACCGGCAACTGTG
TTGTTTCGGGAGCTTCAGGCCAAAGGATATGATGGCAAGGCAGGCATTGTTAGAAACTATATCCGGCAATTTAAGGCAAC
CCGGACCGAACCGGTGCGGCGCTTTGAGACTCCCTCAGGCCATCAGATGCAAGTGGACTTTACCACTATTCGCCGTGGCA
GGCAGAAACTAAAAGCTTTTGTCGCCACGCTCGGTTTTAGCCGGGCAACCTATGTTCGCTTTAGTGAATATGAACGCCAG
GAAGACTGGCTGTCAGGTATTGAGAGTGCGTTGCATTACTTTGGCGGCGTACCCAAAGAGCTGCTGTTTGACAACGCCAA
ATGCATCATGATTGAGCGCGATGCCTATGGCGAAGGCCTACATCGCTGGAATGCCAAATTACTTGGGATGGCTAAGGATT
ACGGTTTTAACCTCAAAGTATGCCGGCCTTATCGTGCCAAAACCAAAGGTAAAGTGGAGCGGTTTAACGGCTACTTGAAA
TCCTGCTTTATCACACCGTTGTTTGCGTCACTCAAACAAGCAGGGCTGGCGCTGGATGTCGATACCGCAAACGCTCAGGT
AGGCAACTGGCTGCATGAGGTGGCTAATCAGCGTATCCATGCCACCACTAACGAAAGCCTCAGGTCTTGCTGGAAAAAGA
GCGTTTCAGTTTACAGCCGTTGCCTGAGGATATGA

Protein sequence :
MLTQEILVEIHVLHRQGKSIRSIAKALNVSRNTVRKYLRDIARTPTYSRRDDRPSKLEPFKTYLLERIEAARPEWIPATV
LFRELQAKGYDGKAGIVRNYIRQFKATRTEPVRRFETPSGHQMQVDFTTIRRGRQKLKAFVATLGFSRATYVRFSEYERQ
EDWLSGIESALHYFGGVPKELLFDNAKCIMIERDAYGEGLHRWNAKLLGMAKDYGFNLKVCRPYRAKTKGKVERFNGYLK
SCFITPLFASLKQAGLALDVDTANAQVGNWLHEVANQRIHATTNESLRSCWKKSVSVYSRCLRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-59 45
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 8e-60 45
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 1e-59 45
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 8e-60 45
y2411 NP_669718.1 transposase Not tested HPI Protein 1e-59 45
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 8e-60 45
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 1e-59 45
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 8e-60 45
unnamed CAA21403.1 - Not tested HPI Protein 1e-59 45
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-59 45
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-59 44
aec56 AAW51739.1 Aec56 Not tested AGI-3 Protein 6e-40 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_2661 YP_004295614.1 integrase catalytic region VFG1626 Protein 5e-60 45
NAL212_2661 YP_004295614.1 integrase catalytic region VFG1607 Protein 5e-60 45
NAL212_2661 YP_004295614.1 integrase catalytic region VFG1514 Protein 5e-60 45
NAL212_2661 YP_004295614.1 integrase catalytic region VFG1461 Protein 6e-60 44