Gene Information

Name : NAL212_2524 (NAL212_2524)
Accession : YP_004295491.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2492135 - 2492998 bp
Length : 864 bp
Strand : +
Note : PFAM: Integrase, catalytic core; KEGG: net:Neut_2192 integrase catalytic subunit

DNA sequence : 
GTGAAGTACGCATGGATCAAAGAGCATGTTAACGAGTTTACGGTCGACTCGATGTGCTGTTTTATGGAAGTTTCTCGAAG
CGCTTATTATGCCTGGCTGCACCGTGTTCAAACTAACAGGGAAAAGGATGATATTGAGCTAACGACAATTATCCGGGATG
TTTTCAGGAACAGCCGTGCTACCTATGGCACCCGGCGTATCCGGGAATCGCTAGTCAGGTGGGAGCGAACCGTCAGCCGT
GGACGAATAGGACGGTTGATGCGAGAAGCCGATCTGGTGTGCAAAACGAAACAAAAATTTAAAGCCACTACAAATTCCAA
ACATGATTTGCCCATTGCGCCTAATCAACTGGATCGGCAATTTAACGTACACCAGCCCAACCAGGTGTATGTGGGTGACA
TCACTTACATTCATACTCAGGAAGGCTGGTTGTATTTAGCCGTGGTAATTGATCTGTATTCACGACAAGTGGTAGGTTGG
TCAATGGCAGACCATATGCGAACAAAGCTGGTGAATGATGCGCTGCTGATGGCTATTTGGCAACGAAAACCTGCGAAAGG
CTTGTTGTGGCATAGTGACCGCGGCAGTCAATACGCATCGGATAGCCACCGGGCGTTATTAAAACAGCATGGCATCCGGC
AAAGTATGAGTCGAAAAGGTAACTGCTGGGATAACGCGGTATCGGAAAGCTTCTTCCACACTCTGAAAACAGAGCTGATA
CATCATCAGACCTATCAAACTCGCGATGAAGCTAAACAAGCTGTGTTTGAGTATATTGAAGTGTTTTACAACCGTGAGCG
ACTGCATTCAGCCAATGGATATTTGTCACCGCTAGACTACGAATTGCAGCACAAAGCTGCTTAA

Protein sequence : 
MKYAWIKEHVNEFTVDSMCCFMEVSRSAYYAWLHRVQTNREKDDIELTTIIRDVFRNSRATYGTRRIRESLVRWERTVSR
GRIGRLMREADLVCKTKQKFKATTNSKHDLPIAPNQLDRQFNVHQPNQVYVGDITYIHTQEGWLYLAVVIDLYSRQVVGW
SMADHMRTKLVNDALLMAIWQRKPAKGLLWHSDRGSQYASDSHRALLKQHGIRQSMSRKGNCWDNAVSESFFHTLKTELI
HHQTYQTRDEAKQAVFEYIEVFYNRERLHSANGYLSPLDYELQHKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-56 48
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-55 48
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-56 48
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-56 48
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-56 48
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-56 48
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-56 48
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-56 48
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 4e-55 47
unnamed AAC31485.1 L0006 Not tested LEE Protein 4e-34 44
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 5e-34 44
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 4e-34 44
Z5089 NP_290241.1 transposase Not tested LEE Protein 5e-34 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-34 44
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-34 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-52 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-46 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-46 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-46 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-49 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 6e-49 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 5e-48 42
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 8e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_2524 YP_004295491.1 integrase catalytic region VFG1706 Protein 4e-56 48
NAL212_2524 YP_004295491.1 integrase catalytic region VFG0785 Protein 2e-34 44
NAL212_2524 YP_004295491.1 integrase catalytic region VFG1631 Protein 2e-52 43