Gene Information

Name : NAL212_2313 (NAL212_2313)
Accession : YP_004295297.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2304403 - 2305839 bp
Length : 1437 bp
Strand : +
Note : KEGG: slt:Slit_2633 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction

DNA sequence : 
ATGTCGATAGATAATGAACGGATTAATCTGCAAAAGAAGACTTCATCTCCCAGAATACTAGTTGTGGATGATGAACCGGA
TATTATTGAATTATTAGAGCTCACACTTGCCCGAATGGGAATGGAAGTTTTTAGCGCAACTTGTATTCATGATGCTAAAG
CGCTACTGCGATCACACTCCTTTCAATTATGCCTTACCGACATGCGATTGCCTGATGGCAATGGATTGGAGCTGGTTAAA
TATATTTCGCAGCACTTTGTTGATGTTCCTACTGCTGTTATTACTGCGTATGGCACCACAGAAAATGCAGTAGCTGCGCT
GAAAGCAGGCGCTTTTGATTATTTACCCAAACCTGTTTCCTTGAAGCAGTTACGTGACCTTGTTAAATCGGCTTTGAGCC
TTCCACCGGTAAAGATCGAATCAGCAGGACAAGGTGAGATAAGTCAACAACGCACGCTACTTGGTGAATCTGAATCCATG
CGCCAGTTACGCGTAACTATCGACAAACTCTCGCGTAGTCAAGCGGCAGTATATATCAGTGGTGAATCCGGTAGTGGTAA
GGAATTAGCCGCAAAAATGATTCATGAAAGAAGTGCGCGTCACAAGCAACCATTTGTTGCAGTCAACTGTGGCGCAATTC
CAGAAAATTTGATGGAAAGTGAATTTTTTGGCTATAAGAAAGGCGCCTTTACTGGCGCGGAAAAAGATCATGATGGATTT
TTTCTGACCGCCAACGCCGGTACCTTGTTTCTGGATGAAGTCGCCGATTTGCCATTAACGATGCAAGTTAAGCTGCTTCG
GGTCATTCAGGAAAAACAAGTAAGAAGGATTGGGGATACACAAGAAAAAAATATTGATGTGCGAATTATCAGTGCCACTC
ACAAAAAGCTAAATCACTGCGTCACAATGGGTCAGTTTCGACAGGATTTGTATTACCGTTTGAATGTCATTGAATTGAAT
ATGCCTGCATTGCGTGAAATGCGCGAAGATATTCCGCTCATTGCAGAAGCTATTCTGGAAAAGCATTGCCAGGAAACCAA
TCGACCTATCTGTCACATCAAAAAAGATGCCATGATCATGCTCAAGAACTATGATTTTCCAGGGAATGTTCGTGAACTTG
AAAATATTCTGGAACGCACGTTAGCGCTTTGTCCGGATGTGGACATTGGAATAGAAGAATTGCAATTGCCGAATCAGAAG
GTTGAAGCAATACCAAACAACGATGCGGCAGAAGTCACTCAAATCCCCGCCATAGCCACTCAAGTGAGGACAGATCATAA
TCTGCCCCTACAGGATTATCTCGATAAACTGGAGAAAGATTCCATTGTCAAGGCGTTGAATGAAAGCCGATACAATCGTA
CTAAAGCAGCTAAAACATTAGGCATCACAGTTCGTTCATTGCGTTACCGGATGGAAAGATTGGGGTTAAACGACTAA

Protein sequence : 
MSIDNERINLQKKTSSPRILVVDDEPDIIELLELTLARMGMEVFSATCIHDAKALLRSHSFQLCLTDMRLPDGNGLELVK
YISQHFVDVPTAVITAYGTTENAVAALKAGAFDYLPKPVSLKQLRDLVKSALSLPPVKIESAGQGEISQQRTLLGESESM
RQLRVTIDKLSRSQAAVYISGESGSGKELAAKMIHERSARHKQPFVAVNCGAIPENLMESEFFGYKKGAFTGAEKDHDGF
FLTANAGTLFLDEVADLPLTMQVKLLRVIQEKQVRRIGDTQEKNIDVRIISATHKKLNHCVTMGQFRQDLYYRLNVIELN
MPALREMREDIPLIAEAILEKHCQETNRPICHIKKDAMIMLKNYDFPGNVRELENILERTLALCPDVDIGIEELQLPNQK
VEAIPNNDAAEVTQIPAIATQVRTDHNLPLQDYLDKLEKDSIVKALNESRYNRTKAAKTLGITVRSLRYRMERLGLND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-103 46
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-103 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_2313 YP_004295297.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0089 Protein 2e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_2313 YP_004295297.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 2e-122 56