Gene Information

Name : NAL212_1640 (NAL212_1640)
Accession : YP_004294676.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1589302 - 1590201 bp
Length : 900 bp
Strand : +
Note : PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit

DNA sequence : 
ATGGTGACATTTATCGATAGCAACAAAGCAAAATACGGGATCGAGCCAATCTGCAGACAAATACAGATTGTCCCGTCGAG
TTATTATGAACACAAAAGATGCGAGCGAGATCCGAATCGATTGCCTGATCGCATCAGACGAGACATGAAGCTGGAACTCG
AAATACAACGGGTTTGGGAGAATAACTTCCGGGTTTATGGTGCTCGCAAAATATGGCGGCAGTTGATACGTGAAGGTACT
CGAGTTGCCCGTTGCACTGTGGAGCGACTGATGAAGAAACTGGGAATACAAGGCATCAAGCGCGGCAAGAAATGTTGGAC
AACCATTTCGGATGATTCGCTCTATCGACCAGCCGACAAGGTTAACCGACAATTTACGGCAATCCGGCCAAATCAATTGT
GGGTGGCAGACATCACATTTGTTGCAACGTGGACAGGCTTTGTTTATGTGGCTTTCATCATCGATGTTTTTGCCCGGTGT
ATTGTTGGTTGGCGAGTCAGCCGATCATTGCATACAGATTTGGTGCTCGATGCACTAGAACAGGCATTGTGGGCGCGGCG
GGAAATCAAAGGATTAATTCATCATAGCGATCACGGCACCCAATATTTGTCGATCCGTTATACGGAACGCCTGACTGAAG
CCAATATTGAAGCTTCTGTCGGCAGTATCGGAGATTCTTATGACAATGCGCTGGCCGAAACAGTTAATGGATTATACAAG
ACCGAAGTCATTCGGCATCGCGGCCCCTGGCGCAGCATCGAAGAAGTGGAATTTGCTACCTTGGAATGGGTGGACTGGTT
CAATAATCGCCGATTACTGGAGCCGATTGGAAATATCCCGCCAGCGGAATTTGAAATGGCATATTATCGCCAACTAGAGG
AGTCGGCCGATGCGGTTTGA

Protein sequence : 
MVTFIDSNKAKYGIEPICRQIQIVPSSYYEHKRCERDPNRLPDRIRRDMKLELEIQRVWENNFRVYGARKIWRQLIREGT
RVARCTVERLMKKLGIQGIKRGKKCWTTISDDSLYRPADKVNRQFTAIRPNQLWVADITFVATWTGFVYVAFIIDVFARC
IVGWRVSRSLHTDLVLDALEQALWARREIKGLIHHSDHGTQYLSIRYTERLTEANIEASVGSIGDSYDNALAETVNGLYK
TEVIRHRGPWRSIEEVEFATLEWVDWFNNRRLLEPIGNIPPAEFEMAYYRQLEESADAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-61 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-61 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-71 65
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-81 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-81 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-81 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-81 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-78 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-78 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-80 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-81 59
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-81 59
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-81 59
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-78 58
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-78 58
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-78 58
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-81 58
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-79 58
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-79 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-57 58
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 7e-78 57
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-54 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_1640 YP_004294676.1 integrase catalytic region VFG1602 Protein 4e-78 57