Gene Information

Name : NAL212_0301 (NAL212_0301)
Accession : YP_004293418.1
Strain : Nitrosomonas sp. AL212
Genome accession: NC_015222
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 167225 - 169114 bp
Length : 1890 bp
Strand : +
Note : PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: nmu:Nmul_A0631 polysaccharide biosynthesis protein CapD

DNA sequence : 
ATGTTTGCCAACCGATACGGGATCCGTACTTTTATCGCTTTTACGCATGATTTTATTGCTGTCGCCGTAGCGTGGTGGCT
GGCTTATTTATGCCGTTTCAATTTTGACATCCCGGCGGTGTCCGTTATATTTTTATTGCAGACGCTGCCCTGGATTGTGT
TGTTCCAAGGCGGAGCTTTTTTGTGGTTCGGGCTTTATCGCGGATTGTGGCGTTATGCCAGTTTGCCGGATTTAAAAAGA
ATCGTTGTTGCGGTGGCTGTGGGTTCGGTAGCGGTAACCTTGATGTTGTGGTTATTCGGCCTGTTGCGAAATGTGCCCGG
TGCGGTCATCATGCTGGCGCCTTTGTTATTGCTGTTGATCATGGGTGGCAGCCGTTTGATATATCGCGCATGGAAAGAAC
GCCGCCTGTACAGTCTGGAAAGTTATGAAGCGAAGCTGGTATTGATTCTGGGTGCTGGAAGCACGGCTGTGAATCTGGTG
AAAGCTTTAACCGGAAGCCGTGAGTGGCATGTGGTAGGTATGCTGGATGATGATCCCAGAAAACTGGGCACACGGTTGCA
AGGTGTGCGTGTGCGCGGGACGATCAAAGAACTGCCGCAATGGGTGCAGAAACTGAATGTCGGGCATGTGATTATTGCCA
TACCATCGGTTTCTCGGCGCATACACCGTCAGGCTTTGGAAATGTGTTCGGAAATCGGTGTGAAAGCGATGACAGTGCCG
TCCTATGCGGATTTGATCAGCGGTAAGACGACGGTGTCACAAATTCGTGAAATCCAGTTGGATGATTTGCTGGGCAGGGC
GCCTGTGGTTCTGGATGACGACGGTTTGCACGATTTGCTGACAGGGAAGGTGATTCTGGTGACAGGAGCAGGCGGTTCGA
TTGGTTCGGAGTTATGCCGCCAGCTCGTCTCGTTTGAACCAAAGCGTATTATTTTCGTTGAGTTAAGCGAATTCTCGCTC
TACACCATTCAGGAAGAATTTTTGGCGCGTTATCCAGCGATGAATATGTCGTTTGTAATTGGTGATATCAAGGATCACGC
CCGAATGATACAATTATTTACGCAATTTCATCCTACCGTGGTTTTTCATGCGGCTGCGTACAAGCATGTGCCGCTGATGG
AGCAGGAAAATGCATGCCAGGCTATTTTGAATAATGTGTTGGGCACTTATGTGCTGGCTCAGGTGGCGATTAATTTTGCG
GTAGATAAATTTGTTTTGATTTCCACTGACAAGGCGGTTAATCCTGTGAGTGTCATGGGTGCTAGCAAGCGGCTGGCAGA
AATGGTTTGTCAGGCTTTGCAACAATCAATTTCAAAGCATTTGAATGCTGACCGGAACTATCCATCGCGCCAAACCTGTT
TTGTGATGGTGCGGTTTGGCAATGTGCTGGGCAGTACCGGCAGTGTCATTCCGAAATTCCGTGAACAGATTGCAAAAGGG
GGGCCGATTACCATCACCCATCCAGACATGACACGTTATTTCATGTCCATTCCGGAAGCTGCGCAACTGGTTTTACAGGC
CGGACTGATGGGGGGTACGCAAGGTGGCGGTGAAATTTTTGTGCTGGATATGGGGGATCCTGTCAAGATCGTTGATCTGG
CCAATGATTTGATCCATTTGTCCGGTTTGGCGGAAGGAGATATTCGTATTGAATTTACGGGATTGCGCCCGGGTGAAAAG
ATACATGAGGAATTACTGGCGACGAGTGAAAGTACGCTTCCGACACCTCATCAGAAATTACGTATTGCGCAGGCATGTCA
GGTTGATGAGCAGTGGTTATCGGAGTTGGTGGCTTGGTTGGATAAAGTGACTGTACTAAGTGATCAGGAAGTTCGTGATG
AACTGATTAAGTGGGTGCCCGAATACACTCATAGGGAAGTGGGGCATTGA

Protein sequence : 
MFANRYGIRTFIAFTHDFIAVAVAWWLAYLCRFNFDIPAVSVIFLLQTLPWIVLFQGGAFLWFGLYRGLWRYASLPDLKR
IVVAVAVGSVAVTLMLWLFGLLRNVPGAVIMLAPLLLLLIMGGSRLIYRAWKERRLYSLESYEAKLVLILGAGSTAVNLV
KALTGSREWHVVGMLDDDPRKLGTRLQGVRVRGTIKELPQWVQKLNVGHVIIAIPSVSRRIHRQALEMCSEIGVKAMTVP
SYADLISGKTTVSQIREIQLDDLLGRAPVVLDDDGLHDLLTGKVILVTGAGGSIGSELCRQLVSFEPKRIIFVELSEFSL
YTIQEEFLARYPAMNMSFVIGDIKDHARMIQLFTQFHPTVVFHAAAYKHVPLMEQENACQAILNNVLGTYVLAQVAINFA
VDKFVLISTDKAVNPVSVMGASKRLAEMVCQALQQSISKHLNADRNYPSRQTCFVMVRFGNVLGSTGSVIPKFREQIAKG
GPITITHPDMTRYFMSIPEAAQLVLQAGLMGGTQGGGEIFVLDMGDPVKIVDLANDLIHLSGLAEGDIRIEFTGLRPGEK
IHEELLATSESTLPTPHQKLRIAQACQVDEQWLSELVAWLDKVTVLSDQEVRDELIKWVPEYTHREVGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-80 44
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-83 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NAL212_0301 YP_004293418.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-82 45
NAL212_0301 YP_004293418.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 2e-73 44