Gene Information

Name : LAC30SC_04425 (LAC30SC_04425)
Accession : YP_004291982.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Unknown
Product : transposase ORF_A
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 903061 - 903408 bp
Length : 348 bp
Strand : -
Note : COG3436 Transposase and inactivated derivatives

DNA sequence :
ATGATTAACCTCTATGACCTAGGACAGGTCTATATTGTTTGTGGTCGAACTGACATGAGGCGCGGAATCGATGGCCTGGC
TGCCATAGTTAAAGATAAATTTGATTTAGATCCCTTTGCTGGTCAGGTATTTATCTTCTGTGGCGGCAGTCGTGATCGCT
TTAAAGCTTTATATTGGGATGGTCAAGGTTATTGGCTCTTATATAAGAGATTCGAAAATGGCAAGATGAGCTGGCCAAAC
AATCAGGACGAAGTTAGGGCTTTATCACCAGAACAAGTAGACTGGCTAATGAAAGGCTTCTGTATTGAGCCAAGAATAAA
AACAACGAACGCACGCAATTTCTATTGA

Protein sequence :
MINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDKFDLDPFAGQVFIFCGGSRDRFKALYWDGQGYWLLYKRFENGKMSWPN
NQDEVRALSPEQVDWLMKGFCIEPRIKTTNARNFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 9e-09 45
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 3e-14 43
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-10 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 1e-10 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 3e-10 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-10 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 3e-10 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 5e-10 41
unnamed AAL99258.1 unknown Not tested LEE Protein 3e-10 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 5e-10 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 3e-10 41
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 5e-10 41
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 3e-09 41
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 3e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAC30SC_04425 YP_004291982.1 transposase ORF_A VFG1517 Protein 4e-09 45
LAC30SC_04425 YP_004291982.1 transposase ORF_A VFG1709 Protein 1e-10 41
LAC30SC_04425 YP_004291982.1 transposase ORF_A VFG0792 Protein 1e-10 41
LAC30SC_04425 YP_004291982.1 transposase ORF_A VFG1698 Protein 3e-11 41