Gene Information

Name : LAC30SC_02900 (LAC30SC_02900)
Accession : YP_004286889.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 599624 - 601324 bp
Length : 1701 bp
Strand : -
Note : COG3666 Transposase and inactivated derivatives

DNA sequence :
ATGTATCAAAATTATATCACAGGACAAACTACTTTATCATTAAATTTAGATTTTTCTATCCCTGCAAATCACATTGCCAG
TGTTATCAGTGAATTCGTTGATTCTATTCCTAACGAAGTTATCTTAGAAACCACTTCTGATACTGGTCGGCCAGCATATC
ACCCAGCAATGATGCTTAAGATCTTGCTCTTTGCCTATTCCAGAAGAGTCTTTTCAGGCAGAAAAATTGAAAGAATGCTA
GAAGAGAATCTGCCCATGATGATTTTGGCTGACAATAGAAAGATTTCTTATCACACGATCAATAATTTCAGATCAAGCGA
CCATGCCAATAAGGTAATTAAGCAGTGCTTTGTCTACTTTACTTCATTATTAGAAGATGAGGGATTAATCCGTGAAAATG
CAGTTTTTATCGATGGTACTAAGATTGAAGCGGACGCCAACAGGTACACTTTTGTCTGGCGAAAAGCTATTGAGAAGTAT
CATGCCAAGTTAAAGGAAGACGTGTCTGCTTTATATGAAGAACTGATCAATAAAGAAGTAGTCAAAGCCATGGCCGAAGA
AGAAGCCCAAACTAGTCAAGGCTTAGAGATTCTGGCTCAAGAAACGGAAAAAGAAGTTGAGAAGCTGACCGAGAAAATTG
ATCGAGAACCTAAAGTCGTTCCAGGCGGATCAAAAAATAAGGCCAAGCGCCGTGAATTAAAGAAGATCGCACATAAACTC
AGAAAAGATTTTATTCCGCGTGCTAAAAAGTACGAAGAAGCTGAAGAGATCTTTGCTGGCCGTAACAGCTACTCTAAAAC
AGATCATGATGCCACCTTCATGCATATGAAAGAAGATCATATGAAAAACGGGCAGCTAAAGCCAGGCTACAATATTCAGG
CAGCGACTACTAATCAATATATAGTTGATTTTGCCCTGTTTCCTAATCCGACTGACTTTAGAACATTCGAACCATTTCTA
GACCAAATGAAGTCCAGAGGAATTCTCGATAAGTTTCAAAATATTGTGGCCGATGCGGGCTATGGCAGTGAATACAATTA
CTCGATTCTGGAAGAGAATTATTCCGATAAGAACTATCAGATTCCGTATACCCAATACGAAAAAGAACAAACGCGAAAAT
ATAAGAAAGATCCATCAAAGGTCGACAACTGGTACTATAACGAAGAAGAAGACTATTACGTAGATAAATCAGGCGTCCGC
TTCAACTTCAAATATTATAGTCAAAGAAAAGATCGATCTACTGGCATGGTCAGAAACTTCAAAATTTATGAAGCCGACGA
GTTCCAGCTAACTGAAGAACTGACCCAATTGGCTAAAACCAAAACAGGTCGACAAAGACAGATTCACTACAATCCTAACT
GGCAGTATTTAAAAGAAAAAGCAAAAGAGACTCTTCAAAGCAAAGAAGGCAAACGCATCTATGGCTGTCGCAAGTCAGAT
GTGGAGCCAATTTTTGGGCACATGAAGAGTGTATTTGGTATGCGCAGAACGCATTTAAGAGGCCAAAAGAAAGTCGAAAC
GGATGTCGGTATCATGTTCATGACGATGAATCTGAAAAAATATGGAGCCAAGAAGAAGGTAAAGCCTTCGAATTTTCATT
TCAAAAACAAAAAACACAGGAATTCACTAAAAATAATGAATTTCTGTGTTTTTATATCCGGGCTAAAAATCGAGTTTCTT
CCCAGACACTTTACTTATTAA

Protein sequence :
MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSDTGRPAYHPAMMLKILLFAYSRRVFSGRKIERML
EENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYFTSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKY
HAKLKEDVSALYEELINKEVVKAMAEEEAQTSQGLEILAQETEKEVEKLTEKIDREPKVVPGGSKNKAKRRELKKIAHKL
RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQYIVDFALFPNPTDFRTFEPFL
DQMKSRGILDKFQNIVADAGYGSEYNYSILEENYSDKNYQIPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVR
FNFKYYSQRKDRSTGMVRNFKIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSKEGKRIYGCRKSD
VEPIFGHMKSVFGMRRTHLRGQKKVETDVGIMFMTMNLKKYGAKKKVKPSNFHFKNKKHRNSLKIMNFCVFISGLKIEFL
PRHFTY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 3e-64 42
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 2e-68 42
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 2e-68 42
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 2e-68 42
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 1e-68 42
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 5e-66 42