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Name : LAC30SC_01945 (LAC30SC_01945) Accession : YP_004286713.1 Strain : Lactobacillus acidophilus 30SC Genome accession: NC_015214 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 377329 - 379029 bp Length : 1701 bp Strand : - Note : COG3666 Transposase and inactivated derivatives DNA sequence : ATGTATCAAAATTATATCACAGGACAAACTACTTTATCATTAAATTTAGATTTTTCTATCCCTGCAAATCACATTGCCAG TGTTATCAGTGAATTCGTTGATTCTATTCCTAACGAAGTTATCTTAGAAACCACTTCTGATACTGGTCGGCCAGCATATC ACCCAGCAATGATGCTTAAGATCTTGCTCTTTGCCTATTCCAGAAGAGTCTTTTCAGGCAGAAAAATTGAAAGAATGCTA GAAGAGAATCTGCCCATGATGATTTTGGCTGACAATAGAAAGATTTCTTATCACACGATCAATAATTTCAGATCAAGCGA CCATGCCAATAAGGTAATTAAGCAGTGCTTTGTCTACTTTACTTCATTATTAGAAGATGAGGGATTAATCCGTGAAAATG CAGTTTTTATCGATGGTACTAAGATTGAAGCGGACGCCAACAGGTACACTTTTGTCTGGCGAAAAGCTATTGAGAAGTAT CATGCCAAGTTAAAGGAAGACGTGTCTGCTTTATATGAAGAACTGATCAATAAAGAAGTAGTCAAAGCCATGGCCGAAGA AGAAGCCCAAACTAGTCAAGGCTTAGAGATTCTGGCTCAAGAAACGGAAAAAGAAGTTGAGAAGCTGACCGAGAAAATTG ATCGAGAACCTAAAGTCGTTCCAGGCGGATCAAAAAATAAGGCCAAGCGCCGTGAATTAAAGAAGATCGCACATAAACTC AGAAAAGATTTTATTCCGCGTGCTAAAAAGTACGAAGAAGCTGAAGAGATCTTTGCTGGCCGTAACAGCTACTCTAAAAC AGATCATGATGCCACCTTCATGCATATGAAAGAAGATCATATGAAAAACGGGCAGCTAAAGCCAGGCTACAATATTCAGG CAGCGACTACTAATCAATATATAGTTGATTTTGCCCTGTTTCCTAATCCGACTGACTTTAGAACATTCGAACCATTTCTA GACCAAATGAAGTCCAGAGGAATTCTCGATAAGTTTCAAAATATTGTGGCCGATGCGGGCTATGGCAGTGAATACAATTA CTCGATTCTGGAAGAGAATTATTCCGATAAGAACTATCAGATTCCGTATACCCAATACGAAAAAGAACAAACGCGAAAAT ATAAGAAAGATCCATCAAAGGTCGACAACTGGTACTATAACGAAGAAGAAGACTATTACGTAGATAAATCAGGCGTCCGC TTCAACTTCAAATATTATAGTCAAAGAAAAGATCGATCTACTGGCATGGTCAGAAACTTCAAAATTTATGAAGCCGACGA GTTCCAGCTAACTGAAGAACTGACCCAATTGGCTAAAACCAAAACAGGTCGACAAAGACAGATTCACTACAATCCTAACT GGCAGTATTTAAAAGAAAAAGCAAAAGAGACTCTTCAAAGCAAAGAAGGCAAACGCATCTATGGCTGTCGCAAGTCAGAT GTGGAGCCAATTTTTGGGCACATGAAGAGTGTATTTGGTATGCGCAGAACGCATTTAAGAGGCCAAAAGAAAGTCGAAAC GGATGTCGGTATCATGTTCATGACGATGAATCTGAAAAAATATGGAGCCAAGAAGAAGGTAAAGCCTTCGAATTTTCATT TCAAAAACAAAAAAACACAGGAATTCACTAAAAATAATGAATTTCTGTGTTTTTATATCCGGGCTAAAAATCGAGTTTCT TCCCAGACACTTAGTATGTAA Protein sequence : MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSDTGRPAYHPAMMLKILLFAYSRRVFSGRKIERML EENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYFTSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKY HAKLKEDVSALYEELINKEVVKAMAEEEAQTSQGLEILAQETEKEVEKLTEKIDREPKVVPGGSKNKAKRRELKKIAHKL RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQYIVDFALFPNPTDFRTFEPFL DQMKSRGILDKFQNIVADAGYGSEYNYSILEENYSDKNYQIPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVR FNFKYYSQRKDRSTGMVRNFKIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSKEGKRIYGCRKSD VEPIFGHMKSVFGMRRTHLRGQKKVETDVGIMFMTMNLKKYGAKKKVKPSNFHFKNKKTQEFTKNNEFLCFYIRAKNRVS SQTLSM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 2e-64 | 42 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 1e-68 | 42 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 1e-68 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 1e-68 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 1e-68 | 42 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 4e-66 | 42 |
