Gene Information

Name : LAC30SC_10335 (LAC30SC_10335)
Accession : YP_004293099.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2001357 - 2002058 bp
Length : 702 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGCTTACATTGAACTTAAAAATAATACCAAAATTTATCAATCCGGCGATACGCAAATCTATGCCAACAAAGATATCAC
CTTCTCTGTCGCCAAAGGAGAATTAGTCATCATCCTTGGCTCATCTGGTGCCGGCAAATCTACTTTGCTTAACATTCTAG
GCGGCATGGAGCCTAATACCAGTGGTGATGTTATCGTTGCTGGCAAAAATATCGCTGGTTATAACGCTAAAGAGCTGACG
ACGTATCGGCGCAACGACATCGGTTTCGTTTTCCAATTCTACAACTTAATTCCTAACTTAACGGCCAAAGAAAATGTGGA
ATTAGCTGCACAAATCGTACCGGATGCGATGGACGCAGACGAAGCGCTAAAATACGTCGATTTGGGCGATCGTGAAAACA
ACTTTCCGGCTCAACTATCTGGTGGTGAACAACAGCGTGTAGCTATCGCTCGTGCCATTGCCAAAAAGCCAGAGCTGCTT
TTATGTGATGAACCTACAGGAGCACTCGACTACCAAACTGGTAAACGTATCTTAAAGATCCTGCAAAACATGAGCCGCGA
GAATGGTTCCACCGTTTTAATCGTTACTCATAACGCTGCTATTGCTCCAATTGCCGACAAGGTGATCCGCATCCACGATG
GCGGCATTCAGGATATTCACATTAATAAAAAGCCTGCTGATATCAGTACTATTGAATGGTAG

Protein sequence : 
MAYIELKNNTKIYQSGDTQIYANKDITFSVAKGELVIILGSSGAGKSTLLNILGGMEPNTSGDVIVAGKNIAGYNAKELT
TYRRNDIGFVFQFYNLIPNLTAKENVELAAQIVPDAMDADEALKYVDLGDRENNFPAQLSGGEQQRVAIARAIAKKPELL
LCDEPTGALDYQTGKRILKILQNMSRENGSTVLIVTHNAAIAPIADKVIRIHDGGIQDIHINKKPADISTIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAC30SC_10335 YP_004293099.1 ABC transporter ATPase NC_012469.1.7685735. Protein 6e-75 66
LAC30SC_10335 YP_004293099.1 ABC transporter ATPase NC_012469.1.7686878. Protein 3e-37 44
LAC30SC_10335 YP_004293099.1 ABC transporter ATPase CP001581.1.gene798.p Protein 6e-44 43
LAC30SC_10335 YP_004293099.1 ABC transporter ATPase NC_012469.1.7686946. Protein 2e-22 41
LAC30SC_10335 YP_004293099.1 ABC transporter ATPase CP001581.1.gene598.p Protein 2e-38 41