Gene Information

Name : LAC30SC_10010 (LAC30SC_10010)
Accession : YP_004293040.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1931736 - 1932410 bp
Length : 675 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence :

ATGGCAGTAATTGAATTAAAAGACGTAAAGAAAGTTTATGGTAAAGGTGACGCGCAAGTTGTTGCTTTAAAAGATATTAA
CTTTAAGGCAGATAAAGGCGAAGTTGTTTTAATTATGGGACCTTCCGGTGCTGGTAAGAGTACTTTTTTGACGATTGCAG
GTTCATTGCAAAAGCCAACTTCAGGCGAAGTCTTGATTAACGATGAAGATATCAGCGATTTTTCCGCCAAAAAGCGTAAT
GAATTGCGTTTGAACAAAATCGGTTTTGTTTTGCAAGCTTACAACCTAGTACCATTTTTGACAGTGAATGAGCAATTTAC
TTTAGTTGATAAGGTAAAAAAGCAAAATAATATCTCACGAGAAGAATTGCAAGATCTGCTTAAGCAATTAGGTATTACAG
ATTTGGTCAAGAAATACCCCAGTGAATTATCAGGTGGTCAGCAGCAACGTGCCGCTATTGCGCGTGCGCTTTACGCTAAT
CCAGAAATCCTGCTAGCAGATGAACCTACTGCTTCGCTTGATACGAAGAATGTCGAAGAGGTAGGACAATTGTTCAAGGA
TCTCGCCAAAAAGCGTGACAAGGTCGTTATGCTCGTTACACACGATCCTCGACTTGAGAAGTATGCCGATCACATCTATG
AAATGATGGATGGGCAAATGACCCAGAAAAAATAG

Protein sequence :

MAVIELKDVKKVYGKGDAQVVALKDINFKADKGEVVLIMGPSGAGKSTFLTIAGSLQKPTSGEVLINDEDISDFSAKKRN
ELRLNKIGFVLQAYNLVPFLTVNEQFTLVDKVKKQNNISREELQDLLKQLGITDLVKKYPSELSGGQQQRAAIARALYAN
PEILLADEPTASLDTKNVEEVGQLFKDLAKKRDKVVMLVTHDPRLEKYADHIYEMMDGQMTQKK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAP55232.1	unknown	Not tested	SaPIbov2	Protein	3e-43	50
SARLGA251_00480	YP_005754062.1	ABC-type transport system ATPase	Not tested	Type-XI SCCmec	Protein	6e-38	47

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
LAC30SC_10010	YP_004293040.1	ABC transporter ATP-binding protein	CP001581.1.gene798.p	Protein	5e-31	42