Gene Information

Name : LAC30SC_08995 (LAC30SC_08995)
Accession : YP_004292837.1
Strain : Lactobacillus acidophilus 30SC
Genome accession: NC_015214
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1754025 - 1754726 bp
Length : 702 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGATGAAAAAGATGTCAAAATTCTGCTAGTTGAAGATGAAGAAGCAGTGGCTAGCTTTGTGAAAACAGAGCTGGGATT
TGAAGGCTACCAGGTAATTTGGGCACAAGATGGTAAGGAGGCACTCGAGCTTTTTCAAAAAGAAGATCCTACCTTAATCC
TGCTTGATTGGATGCTGCCAGTTTATGACGGCATCACTGTATTGCGTAGAATCCGCAAACAAAGCGATGTGCCAATCATT
ATGTTAACGGCGAAAAATTCCGCTTCTGACATTAGTTCTGCTCTTGATCAAGGCTTAGATGACTACATTACCAAACCTTT
TGAAATTGAGGAACTTTTTGCCAGAATTCGGGTTATTTTGCGTCGCTTAAAAAAGACCCAAGAACAAAATGTAGCCCCTA
CTTCCACCTTTACTTTTGGTCCATTAAAAATCGACTTGGTAAAGCACGAATTCTACTGCAATGACGAAAAGATTTATTTA
ACGCCAAAAGAATTCGCCTTAATGACCGAACTGATGCAGGATCCCGAAAAAGTAAAAAGCCGTGATGAACTGCTCGACGT
CGTCTGGGGCTATGACTTCGTGGGCCAAACCAACACGGTTGATGTCTACATTAGAACCATCCGCAACAAGTTGGGCGAAC
CATATAAGAAGCTCATCAAAACGGTGCGCGGCCTCGGCTATTGTTTAAGAGAAGACGATTAA

Protein sequence : 
MDEKDVKILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGITVLRRIRKQSDVPII
MLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYL
TPKEFALMTELMQDPEKVKSRDELLDVVWGYDFVGQTNTVDVYIRTIRNKLGEPYKKLIKTVRGLGYCLREDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-33 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAC30SC_08995 YP_004292837.1 response regulator NC_002952.2859905.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_002745.1124361.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_009782.5559369.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_002951.3237708.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_002758.1121668.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_009641.5332272.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_013450.8614421.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_007793.3914279.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_007622.3794472.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator NC_003923.1003749.p0 Protein 3e-36 45
LAC30SC_08995 YP_004292837.1 response regulator HE999704.1.gene1528. Protein 9e-33 44
LAC30SC_08995 YP_004292837.1 response regulator HE999704.1.gene2815. Protein 1e-35 44
LAC30SC_08995 YP_004292837.1 response regulator NC_013450.8614146.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_002951.3238224.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_007793.3914065.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_002758.1121390.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_010079.5776364.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_002952.2859858.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_007622.3794948.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator NC_003923.1003417.p0 Protein 1e-33 43
LAC30SC_08995 YP_004292837.1 response regulator FJ349556.1.orf0.gene Protein 6e-33 43
LAC30SC_08995 YP_004292837.1 response regulator AE015929.1.gene1106. Protein 7e-29 41
LAC30SC_08995 YP_004292837.1 response regulator NC_012469.1.7686381. Protein 2e-33 41
LAC30SC_08995 YP_004292837.1 response regulator AF155139.2.orf0.gene Protein 7e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAC30SC_08995 YP_004292837.1 response regulator VFG0596 Protein 2e-33 41
LAC30SC_08995 YP_004292837.1 response regulator VFG1390 Protein 5e-40 41