Gene Information

Name : Dester_1234 (Dester_1234)
Accession : YP_004281929.1
Strain : Desulfurobacterium thermolithotrophum DSM 11699
Genome accession: NC_015185
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1225226 - 1226551 bp
Length : 1326 bp
Strand : +
Note : COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR005714: IPR004100: IPR000194: IPR003593; KEGG: pmx:PERMA_0715 flagellar protein export ATPase FliI; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

DNA sequence :
TTGAAAGAGAGATTAAAAAGTCTTCCTAAGTATAGAGTTATAGGGAAGGTTTCTGGAGTAAGAGGTCCCATAGTTGAAGC
AAAATTGCCTAAAGTACACATTGGAGATTTTTGTACTATAGATAACACGATAGAAGCCGAAGTGGTTGGATTTAAAGAAG
GAAAAACTCTCTTGATGGCTTATAGTGATACTACCGGTATTAGTTTAGGTAGTATCATCGAATCAAAAATCTCAGGTTTG
AAAATAGGAGTTTCAGATAGTCTTTTAGGACTTGTGCTAGATCCTTTTGGAAATCCTATGAATGCAGAAAGTTTTGTACC
TATTGACTTTGTTCCTTTAAAAGCTGAACCAATCAATCCAATGAAAAGAAAACGAATAAAAGAACCTCTTGATCTTGGTG
TTAGAGCTATTAATGCATTACTTACTGTTGGTAAAGGACAAAGAATAGGAATATTTGCAGGTGCAGGTGTTGGAAAGAGT
ACACTTATGGGAATGATTTCTCGTTTTACAGAAGCAGACGTAAACGTTGTTGCTCTTATTGGAGAAAGAGGTAGAGAGGT
TCGAGAGTTTATTGAAGATAATCTAGGAGAAGAAGGACTGAAAAAATCTGTTATAGTTGTTGCTACATCTGATCATCCTC
CGCTTGCAAAAATAAGAGCTGCATTTACAGCCTGTGCAATTGCTGAATACTTTTCTTACAAAGGAAAAAATGTTTTATTG
TTTGTAGATTCTCTTACAAGGTTAGCAATGGCACAAAGAGAAATAGGTCTTGCAGTAGGAGAACCTCCAACGTCAAAAGG
TTATACTCCTTCTGTATTTTCTACAATGGCTAAACTTATAGAAAGAGCAGGTAACTTTACGGATGGAGGAAGTATTACTG
GAATTTATACAGTTTTGGTTGAGGGAGATGATATTTCACTTGATCCTGTAGCAGATGCTGCAGTAGGTTTTTTAGATGGT
CACATAATTCTTTCTCGTGAATTAGCCAATAGAAGAGTATTTCCTTCAATAGATATAATCAAGAGTATAAGTAGACTAAC
CCCTCAACTTGTTAACGAAGAAGTTCTAAAGTATCAATCTATTGTTCTAGACGTTGAAAGTACTTATCAAAACAATAGTG
ATGTTATTAACCTTGGTCTCTATAAGAAAGGAACATCTCCAAAAATAGATCTTGCTATCAAGGTCTATCCTGCTATTGAG
AATTTCATAAAACAATCTTTTAACGAAAAAGTTACTTTCTCTCAAAGCTTGAAAGAACTAAAAAGTTTGGTAGAATATAT
AAAAATAGAGGGAGATCACTATGGCTATAGATGGAATAACAAGTGA

Protein sequence :
MKERLKSLPKYRVIGKVSGVRGPIVEAKLPKVHIGDFCTIDNTIEAEVVGFKEGKTLLMAYSDTTGISLGSIIESKISGL
KIGVSDSLLGLVLDPFGNPMNAESFVPIDFVPLKAEPINPMKRKRIKEPLDLGVRAINALLTVGKGQRIGIFAGAGVGKS
TLMGMISRFTEADVNVVALIGERGREVREFIEDNLGEEGLKKSVIVVATSDHPPLAKIRAAFTACAIAEYFSYKGKNVLL
FVDSLTRLAMAQREIGLAVGEPPTSKGYTPSVFSTMAKLIERAGNFTDGGSITGIYTVLVEGDDISLDPVADAAVGFLDG
HIILSRELANRRVFPSIDIIKSISRLTPQLVNEEVLKYQSIVLDVESTYQNNSDVINLGLYKKGTSPKIDLAIKVYPAIE
NFIKQSFNEKVTFSQSLKELKSLVEYIKIEGDHYGYRWNNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-85 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 5e-77 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-76 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-76 46
escN AAC31513.1 L0034 Virulence LEE Protein 1e-76 46
escN YP_003223475.1 translocator EscN Virulence LEE Protein 9e-77 46
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-76 46
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 8e-77 46
escN AAC38383.1 EscN Virulence LEE Protein 1e-76 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 5e-77 46
escN AAK26715.1 EscN Virulence LEE Protein 7e-77 46
escN AAL57542.1 EscN Virulence LEE Protein 7e-77 46
escN CAI43874.1 EscN protein Virulence LEE Protein 6e-77 46
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-73 45
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-73 45
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-74 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-76 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-76 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-75 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-75 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-76 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-67 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-78 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-79 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-78 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 9e-73 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 7e-73 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-79 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-79 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-79 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-79 44
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-78 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-68 43
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-72 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 9e-71 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 9e-65 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 5e-68 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 5e-68 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 7e-76 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-73 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-69 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 6e-70 41
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG1254 Protein 2e-86 52
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0390 Protein 1e-85 46
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG2144 Protein 2e-84 46
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0730 Protein 6e-77 46
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0812 Protein 7e-77 46
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0048 Protein 6e-82 45
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0192 Protein 5e-87 45
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG0515 Protein 2e-76 45
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG2499 Protein 1e-81 45
Dester_1234 YP_004281929.1 FliI/YscN family ATPase VFG2331 Protein 2e-77 44