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Name : Pedsa_3253 (Pedsa_3253) Accession : YP_004275610.1 Strain : Pedobacter saltans DSM 12145 Genome accession: NC_015177 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3870232 - 3872130 bp Length : 1899 bp Strand : + Note : COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: phe:Phep_3919 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: capsular polysaccharide biosynthesis protein; PFAM: CoA binding d DNA sequence : ATGTTTAGACGAATAAACATTGTTCCGCGTTGGTTAATCTTCTGCCTGGATTTGCTGTGTTGTGCCCTATCCATGGGTTT GGCCTACTTTATAAAATACGATTTCAGCATTAATCATATAGATATACAAGAGTTGAGCAGGAATCTATTGATTTTTGGAC TGATTAATTGTATTGTGTTCTTTAATGTAAAGACCTATGCGGGTATTGTGAGATATACCAGCGCTCAGGATTCTTTTAGA ATTCTGTTTGCCATTTCTTTAAGCAACGGACTTTTTATTTTAGCGAATATTGTTTCCTTGTCTTTAGGGAAAGATGTTTT CATATCCAATGTAGTTATTGTAATAACCGGGCTTTGTAGTTTCGTTATGCTGATTACGTATAGGGTTTTGGTAAAGTACT TTTTTGTTTATATCAAAAATCTGCGTCTGGATAAAAAGAGGGTGGTGATATTTGGAGCTGGAGAAACTGGGATTGCGACA AAGCGAGCACTGGATACGGATCCTAAAATTAATATGAGCGTTGTTGCCTTTGTGGACAACGACCCCCGTAAAAGCAGTAA GGTAGTTGATAATGTTAAAATTTACCATGCAGACTATCTGGAAAGGATCTTATTGGAAGAAAAAATAGATAGCCTGATCT TTACTGCGCCCGGGATGAAAACCGAGGAGAAAAACAAAGTTGTTGATCTTTGTCTGGACAATAATGTAAAGGTATTGAAT GTACCTTTGGTGAGAACCTGGGTAAAGGGTACGGTTAAAACAACCCAGATAAAAGATGTTAAAATTGAGGATTTACTGGA ACGCGACCCGATAATTATTGGTGAAAGCATATTAAACGAGCAGTTATCCGGCAAACGAATATTGGTTACGGGGGCTGCAG GTTCCATAGGTAGCGAGATTGTAAGGCAATTGGCTAAATTCAACCCCCAGACAATTATTTTAAATGATATTGCGGAAACG CCATTGCATGAACTTCAGCTGGAGCTTCAAGATAATAATTTGCTAAATAATTTCATAGCGTTTATTGGTGATGTTAGGAA TAAATCCAGGATGGAACACCTGTTTGAAACTTTTAAACCGCACTATGTATACCATGCTGCGGCCTATAAGCATGTCCCCA TGATGGAACATAATCCTTCGGAGGCCATCTGTACTAACGTTGGTGGAACTAAAAACATGGCTGATTTGGCGGTAAAACAC GGGGCTATTAAATTTGTAATGGTTTCTACTGATAAGGCAGTAAATCCAACAAATGTAATGGGAGCGTCTAAGCGGATTGC GGAGATTTATGTGCAGTCACTTTTCTGTTCTTCCGCTAATGGAGAGAAAACAAGATTTATCACGACCCGTTTTGGAAATG TTTTGGGGTCAAATGGTTCAGTAATACCGCGTTTCCGCGAGCAGATACAAAAAGGAGGACCACTGACGGTAACCCACCCG GATATTACCCGTTATTTTATGACCATTCCGGAAGCTTGCAGATTGGTGCTGGAAGCCGGGTCGATGGGGAAAGGCGGAGA GATTTATATTTTTGATATGGGGCAATCTGTAAAGATTGTGGAACTAGCTAAAAAGATGATTCGGCTTTCTGGCTTTATTC CGAATCAGGATATTAAAATTGAATTTACTGGCCTAAGGCCTGGCGAAAAACTATACGAAGAACTTCTTAATGATAAGGAA AATACAATGCCGACGCATCATGAAAAAATTATGATCGCTAAGGTTATTCCTTATGAGTTTGAATCGGTAAGTATTCATAT AGAAGATCTTGTGACGTTGGCATGTAACTATCAGGATAAAGAGGTTGTGAGGTTGATGAAAAAAATAGTTCCGGAGTTTA AAAGTAATAACTCGACTTACGAAGAGTTAGATAAAGAATTAGAATTTGCAGATGCGTAA Protein sequence : MFRRINIVPRWLIFCLDLLCCALSMGLAYFIKYDFSINHIDIQELSRNLLIFGLINCIVFFNVKTYAGIVRYTSAQDSFR ILFAISLSNGLFILANIVSLSLGKDVFISNVVIVITGLCSFVMLITYRVLVKYFFVYIKNLRLDKKRVVIFGAGETGIAT KRALDTDPKINMSVVAFVDNDPRKSSKVVDNVKIYHADYLERILLEEKIDSLIFTAPGMKTEEKNKVVDLCLDNNVKVLN VPLVRTWVKGTVKTTQIKDVKIEDLLERDPIIIGESILNEQLSGKRILVTGAAGSIGSEIVRQLAKFNPQTIILNDIAET PLHELQLELQDNNLLNNFIAFIGDVRNKSRMEHLFETFKPHYVYHAAAYKHVPMMEHNPSEAICTNVGGTKNMADLAVKH GAIKFVMVSTDKAVNPTNVMGASKRIAEIYVQSLFCSSANGEKTRFITTRFGNVLGSNGSVIPRFREQIQKGGPLTVTHP DITRYFMTIPEACRLVLEAGSMGKGGEIYIFDMGQSVKIVELAKKMIRLSGFIPNQDIKIEFTGLRPGEKLYEELLNDKE NTMPTHHEKIMIAKVIPYEFESVSIHIEDLVTLACNYQDKEVVRLMKKIVPEFKSNNSTYEELDKELEFADA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-84 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-77 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pedsa_3253 | YP_004275610.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-79 | 44 |
| Pedsa_3253 | YP_004275610.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-76 | 41 |
