Gene Information

Name : Pedsa_2452 (Pedsa_2452)
Accession : YP_004274819.1
Strain : Pedobacter saltans DSM 12145
Genome accession: NC_015177
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2865503 - 2865976 bp
Length : 474 bp
Strand : +
Note : COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: phe:Phep_0655 protein of unknown function DUF163; PFAM: protein of unknown function DUF163; SPTR: Ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransfer

DNA sequence :
ATGAAGATTACTTTACTGACCGTTGGCAAAACAGAGGACAAATATTTAGTGGAAGGTATTGAGAAATATGTCAAAAGACT
CAAACATTATGTAAAGTTCGAAATTAAAGATCTACCTGAATTAAAAAACACGAAGAATCTGAGTGAAGACCAGCAAAAGG
CTAAAGAAGCCGAACTGCTGTTAAAAAACTTTTCTAATACAGATTTTATTGTTTTACTGGATGAAAAAGGGGTTTCTTAT
ACATCGGTTCAGTTCGCTGATTTTTTAAATAAGAAGATGATATCGGCTACACAGCATATGATATTTGTAATTGGTGGACC
ATATGGGTTTGACCAAAGCGTTTACCAACGCGCAAACGACAAGATTTCACTTTCTAAAATGACTTTCTCTCATCAGATGG
TGAGATTATTTTTCACTGAACAAATTTACAGAGCATTCACAATCTTAAGAGGTGAGCCTTATCATCATGAATAA

Protein sequence :
MKITLLTVGKTEDKYLVEGIEKYVKRLKHYVKFEIKDLPELKNTKNLSEDQQKAKEAELLLKNFSNTDFIVLLDEKGVSY
TSVQFADFLNKKMISATQHMIFVIGGPYGFDQSVYQRANDKISLSKMTFSHQMVRLFFTEQIYRAFTILRGEPYHHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-28 44
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-28 44
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-28 42
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-28 42
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 9e-28 42
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-28 42
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-28 42
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-28 42
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-28 42
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-28 42
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-28 42
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-28 42
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-28 42
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-28 42
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-27 42
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-28 42
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-28 42