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Name : Pedsa_2427 (Pedsa_2427) Accession : YP_004274796.1 Strain : Pedobacter saltans DSM 12145 Genome accession: NC_015177 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 2839682 - 2840953 bp Length : 1272 bp Strand : - Note : COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR006195: IPR 015866: IPR 002314: IPR 018156: IPR 002317; KEGG: phe:Phep_0415 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: serine--tRNA li DNA sequence : ATGCTGCAAGTTAGTTATATCCGCGAGAATAGAGCACATGTGCTTGAACGTTTAAGTGTAAGAAATTTTGGTCAGCCTGA ATTGGTTGATGAAATCATTGCTATAGATGAGAAAAGACGTTCGACTCAATCGCAGGGAGATGCATTGCAGGCAGAAGCTA ACGCAGCGGCCAAAAAGATTGGTGAGTTGATGAAGGCTGGTCAAAGAGAAGAAGCTGAAGCAATAAAAGCAAAGACCAGT GCTACTAAGGAAGATATTAAAAAATTGAATGACGAGCTGGCTGCTTTGGAGCAGGAATTATACAATAAGATTGTACAATT ACCTAATCTTCCGCATGCATCTGTGCCTAAAGGTATTTCTGCAGAGGATAATGAAATTGTGCTGACTTATGGAGAAGCTC CAAACTTACCTGAAAATGCACAGGCTCATTGGGACCTGGCAGCTAAATATGATTTAATAGACTTTGAGTTAGGAACTAAA ATTACCGGAGCAGGTTTCCCGGTATACAAAGGAAAAGGTGCAAAATTACAGCGCGCATTAATTAATTTTTTCCTGGCAGA GGCCGATAAGGCAGGTTACGAAGAAATGATGTTGCCTCATTTGGTAAACGAAGCTTCTGGTTTTGGAACCGGACAATTGC CGGATAAAGAAGGGCAAATGTATTTTGTAGGTTTGGATAATCTTTATCTTATTCCCACGGCAGAAGTTCCAATTACCAAT CTTTATAGAGATGTTATTTTAAAAGAAGATCAATTGCCTGTTAAAAACTGTGGTTATACACCATGTTTCAGAAGAGAAGC AGGTTCTTATGGGGCACACGTAAGAGGCTTAAACCGTTTGCATCAATTCGATAAGGTAGAGATTGTGCAGGTGGTACATC CGTCTCAATCCTATGAGGTGTTGGAGCAAATGAGCTTACATGTGCAAGGTTTGTTGCAAAAGCTAGGCTTGCATTACAGA GTGCTAAGATTGTGCGGTGGCGATATGGGATTCACTTCTGCCCTAACTTATGATATGGAAGTATGGAGTGCTGCTCAACA GCGTTGGTTAGAAGTCTCTTCTGTATCTAATTTCGAAACTTATCAATCTAATCGCTTGAAATTACGTTTCAAAGCTAGTG AAGGCAAACCACAACTGGCACATACATTAAACGGAAGTGCATTAGCATTACCTAGAATTGTCGCTTCTATTCTGGAGAAT TACCAAACAGAAGATGGGATTAAAATACCTGAGGTATTGATTCCTTATACTGGTTTTGATATGATCAGGTAG Protein sequence : MLQVSYIRENRAHVLERLSVRNFGQPELVDEIIAIDEKRRSTQSQGDALQAEANAAAKKIGELMKAGQREEAEAIKAKTS ATKEDIKKLNDELAALEQELYNKIVQLPNLPHASVPKGISAEDNEIVLTYGEAPNLPENAQAHWDLAAKYDLIDFELGTK ITGAGFPVYKGKGAKLQRALINFFLAEADKAGYEEMMLPHLVNEASGFGTGQLPDKEGQMYFVGLDNLYLIPTAEVPITN LYRDVILKEDQLPVKNCGYTPCFRREAGSYGAHVRGLNRLHQFDKVEIVQVVHPSQSYEVLEQMSLHVQGLLQKLGLHYR VLRLCGGDMGFTSALTYDMEVWSAAQQRWLEVSSVSNFETYQSNRLKLRFKASEGKPQLAHTLNGSALALPRIVASILEN YQTEDGIKIPEVLIPYTGFDMIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-74 | 45 |
