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Name : Plabr_4424 (Plabr_4424) Accession : YP_004272018.1 Strain : Planctomyces brasiliensis DSM 5305 Genome accession: NC_015174 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 5491463 - 5494555 bp Length : 3093 bp Strand : + Note : COGs: COG0610 type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001: IPR004473: IPR007409: IPR006935; KEGG: bcj:BCAL0420 type I restriction component of type I restriction-modification system DNA sequence : ATGACCGGCAGAATATCCGAAGCAGCCATCGAAAATGCTGCACTCAACCAACTCGAATCGCTAAATATCGAGGTTATTCG TAGGGGCGATCTCACGCCCAGTTTTTCTTCTAAGCACGACCTAGGTGTCGTGCTTACTGACGCTATTCACAGCAGTATTG AAAAATTTAACCCTCATCTGCCTGAGGCGACCATAGCTACAGTCGTCGTCTCCCTTTCCCGTCCGCCGCACTCTATCTTG GTCGAGAATAGCCGCTGGTTCCACAAGCTATTGATCGAGGGCGTTCCGGTCGAGTACAAGGACGGCGAAACCGGCGAGAT ACGCGGTGGCCGGGCGCGGCTGATCGACTTCGAGAATCCGGCGAATAACGACTTTCTGGTCGTCCGGCAACTCGCTATCC AGGGGCCGAGTGGCAACAAGATTCGGCCGGACCTGGTTCTGTATGTCAACGGGTTGCCCCTGGTCGTGATCGAACTGAAA GATCCGGCGAATACCACAGCGACGCTGGACATGGCCATTGATCAACTCGTGAGGTACAAGGAAATCGCGCCGGATCTGTT TGTGCCGAACCTGCTGTTGGTGGTCAGCGATGGGTTGCTGACGAGAGTCGGGAGCATCACCAGCGGACGGCAACGGTTCA CGCCATGGCGACCCGAGAAAGGTGGCGAGCCGACACTGGAGGCACTGATCCGCGAATTGCTCACACCTGCAGCGTTGCTT GACTATCTGCGGTCGTGTGTGGCATTCGAGGAAGACGAGCGGGGGAACATCGTCAAAAAAGTGGCGGGCTACCATCAGTT CCGGGCGGTACGGAAGGCGCGGGAGAGCGTGATTGATGCGGTCAAAACGCCCGACCGCCAGAATGACGAAGCCGCCGGCA AAGGGGGGGTGGTCTGGCACACACAAGGATCTGGTAAGAGCCTGACAATGCTGATGCTGGCCGGCACGCTGGTCCGGGCG GCTGAGATGGCCAATCCGACAGTCGTGATCGTCACCGACCGCAACGATCTGGATGACCAGCTGTTCCATACGTTTGCGAT GGGCCGTGAACTGCTGCGACAGGAGCCTGTGCAGGCCGGCAGTCGTGAACACCTCAAACAGCTGCTCGACCGGGCCAGCG GCGGCGTGATCTTCACAACGATCCACAAGTTCGCCGAGTCACACGGCATGATCAGCGAACGGTCGAACGTGGTCGTAATG GCGGACGAGGCCCATCGCAGTCAGTACGGCTTCATTGAAGGTGGCGCTCGCTGGATGCGGGAGGCCTTGCCGAACGCCAC GTTCGTCGGGTTCACCGGAACGCCGCTCATGGCGGGTGACAAAGTGACCCGGCACGTCTTCGGCGAGTATGCGGATGTGT ACGATATTCACCAGGCGGTCGCCGATGGTGCGACAGTGCCAATCTATTACGAACCGCGAATCGTCAAACTGACGATCGAC GAAGCTGGTGCCCGGAAGGCCGAGGCAACGATCGCAGAAGCCGCGAAGGCGGACGAGAACGGCGAGGAGATGGAGGAAAA CATCCGCATTCCTCTCGAAGAGCTTTATGGTGCGCCCGAGCGGTTGGAGCGAGTGGCGAAGTTCCTGGTTGAGCACTGGG AGCAACGGCGTAGCGCAATGGAAGGCAAGGCAATCGTGGTCACGATGAGCCGAGGCATTGCCGCACGACTGTACGACGAG ATCGCCAAGTTGCGTCCGTCTTGGGCCGATGATGATGACGACAAGGGAATGCTGAAGGTCATCATGACCGGCACGCCCGC TGATCCGGAGCACATCGCCAGACACGTTCGAAGCAAGGCTCAGCGGAAAGCACTGGGAGCACGATTTAAAGACCCAGCGG ACGAGTTTCGCCTCGCGATAGTAGTGGATATGTGGCTGACCGGATTTGACGTGCCCTGTGCTCACACGATGTATCTGGAC AAGCCACTCGCCGGTCACAACCTGATGCAGGCAATCGCACGGGTGAATCGCGTCTACGGTGCAAAACCGGGCGGATTGAT CGTCGATCTGATCGGGCTGGCTGATCCTCTCGCCGATGCATTGGCGACCTACGCGAAGGCGACGGGTGACAGCGACAAGC CAGTCAAAGAACTGCAGGACGAGGCGATCCCGGCAATGCAGTCGGCGTTTGAGCAGCTCCGGGATTTCTTCCATGGGTTC GACTATTCGCCAGCACTTGACGCGGATCCACGCACCGTAATACGAACGTACCTCGGAGCTGTCGACCACGTGATGGATGT GAATCAGACCGTCGGCGAGGAAACCGGCTGGAAGCGGTTCCGCGGCATGGTGAAACGACTCTCGACGGCATTTGCCTTGG CAGTTCCACGGGAAGAGACAAAGGAAATCACCCCGCACCTGGCGTTCTTCCAGAATGTCGTGAGGATGATTCGTAAGCGA CTGGCAGAGGATGCGGCCCCGACATCGGGTACAGGTGCGTCGCGAGACATCGACGAGGCCGTCAGGCAGGTCGTCGGCAA TGCTGTGGATGCAGACGATGTAATCGACCTGTTTGCAGCGGCGGGACTCGATACGGCCCGACTGGACATCCTCAGCGATG AGTTCCTGAATCGAGTCTGTGCGTTGGAGCAACAGAACCTGGCCCTTGAGACGCTGCGAAAACTGCTGACGGACCAGATC AAAATCAGCGAGCGGACGAACCTCGTACAGGCGCAGAAGTTTCGCGAAGCGCTTGAGAATGCGATGCTCAGTTACACGAA CAAGCAGATCTCCACAGCCGAAATGATCGCCAGACTTCTGGAACTGGCCAAGTGGGTCCGCGAAGCGAAGCAGCATGGGC ATGACCTGGGCTTGAGCACAGAAGAGATTGCATTCTATGACGCACTGGCAGAAAACGGTTCGGCAAAAGAGGTGATGAAG TCTGACAAGCTCCGCCTAATGGCCCGCGAACTGGCCGAGATGGTCAAGAAGATGCCCAAGCTCGACTGGACTCAACGTGA AAGCGTGCGGGCCGACCTGCGCCGTAAAGTGCGTCGGCTGCTCGCGATGTACGGCTACCCGCCGGACCTGTCAGAAGATG CGACGCAACTGGTACTCAAACAGGCGGAACTCTCGACCGAAGCTGGTGCATAA Protein sequence : MTGRISEAAIENAALNQLESLNIEVIRRGDLTPSFSSKHDLGVVLTDAIHSSIEKFNPHLPEATIATVVVSLSRPPHSIL VENSRWFHKLLIEGVPVEYKDGETGEIRGGRARLIDFENPANNDFLVVRQLAIQGPSGNKIRPDLVLYVNGLPLVVIELK DPANTTATLDMAIDQLVRYKEIAPDLFVPNLLLVVSDGLLTRVGSITSGRQRFTPWRPEKGGEPTLEALIRELLTPAALL DYLRSCVAFEEDERGNIVKKVAGYHQFRAVRKARESVIDAVKTPDRQNDEAAGKGGVVWHTQGSGKSLTMLMLAGTLVRA AEMANPTVVIVTDRNDLDDQLFHTFAMGRELLRQEPVQAGSREHLKQLLDRASGGVIFTTIHKFAESHGMISERSNVVVM ADEAHRSQYGFIEGGARWMREALPNATFVGFTGTPLMAGDKVTRHVFGEYADVYDIHQAVADGATVPIYYEPRIVKLTID EAGARKAEATIAEAAKADENGEEMEENIRIPLEELYGAPERLERVAKFLVEHWEQRRSAMEGKAIVVTMSRGIAARLYDE IAKLRPSWADDDDDKGMLKVIMTGTPADPEHIARHVRSKAQRKALGARFKDPADEFRLAIVVDMWLTGFDVPCAHTMYLD KPLAGHNLMQAIARVNRVYGAKPGGLIVDLIGLADPLADALATYAKATGDSDKPVKELQDEAIPAMQSAFEQLRDFFHGF DYSPALDADPRTVIRTYLGAVDHVMDVNQTVGEETGWKRFRGMVKRLSTAFALAVPREETKEITPHLAFFQNVVRMIRKR LAEDAAPTSGTGASRDIDEAVRQVVGNAVDADDVIDLFAAAGLDTARLDILSDEFLNRVCALEQQNLALETLRKLLTDQI KISERTNLVQAQKFREALENAMLSYTNKQISTAEMIARLLELAKWVREAKQHGHDLGLSTEEIAFYDALAENGSAKEVMK SDKLRLMARELAEMVKKMPKLDWTQRESVRADLRRKVRRLLAMYGYPPDLSEDATQLVLKQAELSTEAGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 43 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 42 |
