Gene Information

Name : Plabr_2798 (Plabr_2798)
Accession : YP_004270419.1
Strain : Planctomyces brasiliensis DSM 5305
Genome accession: NC_015174
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3371568 - 3372614 bp
Length : 1047 bp
Strand : +
Note : COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR003593: IPR002078: IPR002197; KEGG: psl:Psta_0385 sigma54 specific transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor

DNA sequence : 
ATGTCCACACTCGATCACACGCCCGTGCTTGCTGGGATGATCGGTCACAGTCCTGCGATGCAGGAGGTGTATCAGACAAC
CCGTCAGGTTGCTCGTAGTAGTGCTACGGTTCTGCTTCTGGGCGAAACCGGAACGGGTAAAGAAATGATCGCTCGCGCGA
TCCACGAACTCAGTCCGCGCGGAAGCGGTCCGTATATTCGTGTCAACTGTGGCGCTTTGAGTGAAAGCCTGCTCGAAAGT
GAATTGTTCGGGCATGTCAAAGGGGCATTCACTTCGGCTGTGGAAAACCGCACCGGCCGATTTGAAGCCGCTCATGGCGG
AACCATCTTCCTCGACGAAATTAACTCCATGAGTTTCCCGCTGCAGGTCAAACTGCTGCGTGTCCTTCAGGAGCAGGAAT
TCGAGCGCGTCGGGGATACTCGAACTATTTCCGTCGATACCCGCATTGTGGCCGCAACCAACCGCGATCTGCTCGATGAG
GTCGAAGCGGGAGAGTTCCGTGAAGACCTTTATTACCGCTTAAATGTCTGTCCAATTTTCCTGCCGCCGCTTCGCGATCG
TCCCACCGATCTGCCCGAGCTGGCTGACCACTTCATTAAGAAGTATGCCCGGGAGAACGACTTCCAGCCGCTGCAGATGC
AGGAAGAAACGATGAAGCTGCTGCAGCAGTATGGCTGGCCGGGAAATGTCCGCGAACTGGAAAACTACGTCGAGCGGGCC
ATTGTGATGGCAACGACAGGGAAGTTTTCCCCGGATCTACTTCCGCCACACGTGCGCGGCATGACGCCGGTCCGCCTGGG
GATGAGCAAGAAGAAGGATCTGGAGTCGATCAGTGAAGAACTTGTTTCGCTGGGGATGATGCAGTCGTCCGACGATGAAA
CCGATCTGCATCAGCGGATTGTCTCGCTGGTCGAGCGGCAGTTAATTACGCAGACGCTGAAGAGCTGCCAGGGTGTGCAG
ACCAAAACGGCAACGCGTCTGGGGATCAATCGAAACACGTTGCACAAAAAGATCGACGAGTATGGCCTCGGCGGTGAGGT
TCGGTAA

Protein sequence : 
MSTLDHTPVLAGMIGHSPAMQEVYQTTRQVARSSATVLLLGETGTGKEMIARAIHELSPRGSGPYIRVNCGALSESLLES
ELFGHVKGAFTSAVENRTGRFEAAHGGTIFLDEINSMSFPLQVKLLRVLQEQEFERVGDTRTISVDTRIVAATNRDLLDE
VEAGEFREDLYYRLNVCPIFLPPLRDRPTDLPELADHFIKKYARENDFQPLQMQEETMKLLQQYGWPGNVRELENYVERA
IVMATTGKFSPDLLPPHVRGMTPVRLGMSKKKDLESISEELVSLGMMQSSDDETDLHQRIVSLVERQLITQTLKSCQGVQ
TKTATRLGINRNTLHKKIDEYGLGGEVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAC35800.1 transcriptional regulator Virulence Hrp PAI Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plabr_2798 YP_004270419.1 Fis family transcriptional regulator BAC0467 Protein 9e-52 47
Plabr_2798 YP_004270419.1 Fis family transcriptional regulator BAC0089 Protein 4e-54 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plabr_2798 YP_004270419.1 Fis family transcriptional regulator VFG1249 Protein 2e-48 42