Gene Information

Name : Sgly_0227 (Sgly_0227)
Accession : YP_004264599.1
Strain : Syntrophobotulus glycolicus DSM 8271
Genome accession: NC_015172
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 237397 - 238872 bp
Length : 1476 bp
Strand : +
Note : COGs: COG1190 lysyl-tRNA synthetase (class II); HAMAP: lysyl-tRNA synthetase, class II; InterPro IPR004365: IPR004364: IPR002313; KEGG: dhd:Dhaf_0163 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold,

DNA sequence : 
ATGGATCAAATGATGGAGCAGATCAATGAGTTGATTCGTATCAGACTGGATAAGGTTTCGGAACTCAAAGCCAAGGGAAT
TGAACCCTATGCCGACCGTTATGAACGAACTCATATCTCGGAAGAAATTATCAACGGCTTCGATCAGCTTGAAGAAAAAG
AAGTATCGGTTGCCGGAAGAATCATGTCCAAGCGTGATATGGGCAAAACCTGTTTTGCTCATATTCAGGATATCGGTGGC
CGTATTCAAATATATTCAAGGGTGGATGCATTTGGGGAAGAAAAGTTCGAAACCTTTAAAAGTTTAGACATCGGGGATAT
TATCGGAGTCAAGGGCATTGTTTTCAGAACGAAAAAGGGTGAAATTTCCATCAGGGCTGAGGAGTACAGGATTCTATCCA
AATCGCTGCGTAATCTGCCGGAGAAGTTTCATGGTCTGACGAATGTAGAAACACGTTATCGACAACGCTATTTAGATCTG
ATCATGAATAGTGATGTCAAGCAGACCTTTATTGTTAGGAGCCAGATCATCAGGGCAATGAGAGAGTATTTGGAAGACAA
GGGTTTCTTGGAAGTAGAGACTCCCACTTTGATGACCATACCCGGGGGTGCGACAGCCAGGCCGTTTATTACCCATCATA
ATGCCTTGGACATGCAGCTTTATATGAGAATTGCGCTTGAGCTGCCGTTAAAGAGGCTGATTGTTGGCGGATTTGAAAAA
GTGTATGAAATTGGCCGGATTTTTCGCAATGAAGGCATCTCGGTCAAGCATAATCCGGAGTTCACAATGATGGAGCTATA
CCAGGCATATGCCGATTATGAAGATATCATGAACCTGACAGAGGATATGATTATTTATATCACCCGGAAGGTGCATAATA
CATTGGAATTATCCTATCAAGGTGAGACAATTAATTTTGCCAAACCATGGAAAAGAGTAAAGATGCTTGATTTAATCAAG
GAATATACCGGGATTGATTTTGAAGAAATTCAAACTGATGAAGAGGCCCGTGCTGTTGCCGATTCGAGAGGCCTGATCAT
CGGGAAAGATGAAACAAAAGGCAAAATCATTAATGCTTTTTTTGAAGAATATGTGGAATCTAAGTTAATTCAGCCGACTT
TCGTCATTGGTCATCCGGTGGATATTTCTCCACTTGCCAAACGAAATGCCAGGAATCCGGAATATACAGACAGATTTGAG
TTATTTATCTACGGCAGAGAGACAGCAAACGCATTTTCAGAGCTTAATGATCCGATCGATCAAAGAGGCCGGTTTGAAAA
GCAAATGGTTGAACGGGAAAAGGGAGACGAAGAAGCCCATATGCTGGACGAAGATTTCCTCCAGTCTTTAGAATATGGAT
TGCCTCCTACAGGAGGCCTGGGTATCGGGATTGATCGTTTAGTTATGCTGCTGACAGATTCAGCCTCCATCAGAGATGTC
ATCTTATTCCCGACAATGAAACCGCGTGAAGAATAA

Protein sequence : 
MDQMMEQINELIRIRLDKVSELKAKGIEPYADRYERTHISEEIINGFDQLEEKEVSVAGRIMSKRDMGKTCFAHIQDIGG
RIQIYSRVDAFGEEKFETFKSLDIGDIIGVKGIVFRTKKGEISIRAEEYRILSKSLRNLPEKFHGLTNVETRYRQRYLDL
IMNSDVKQTFIVRSQIIRAMREYLEDKGFLEVETPTLMTIPGGATARPFITHHNALDMQLYMRIALELPLKRLIVGGFEK
VYEIGRIFRNEGISVKHNPEFTMMELYQAYADYEDIMNLTEDMIIYITRKVHNTLELSYQGETINFAKPWKRVKMLDLIK
EYTGIDFEEIQTDEEARAVADSRGLIIGKDETKGKIINAFFEEYVESKLIQPTFVIGHPVDISPLAKRNARNPEYTDRFE
LFIYGRETANAFSELNDPIDQRGRFEKQMVEREKGDEEAHMLDEDFLQSLEYGLPPTGGLGIGIDRLVMLLTDSASIRDV
ILFPTMKPREE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-102 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sgly_0227 YP_004264599.1 lysyl-tRNA synthetase VFG1668 Protein 1e-102 51