Gene Information

Name : Deipr_2068 (Deipr_2068)
Accession : YP_004264059.1
Strain :
Genome accession: NC_015169
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 51528 - 53438 bp
Length : 1911 bp
Strand : +
Note : COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003781:IPR003869; KEGG: ddr:Deide_20260 putative capsular polysaccharide biosynthesis protein CapD; putative membrane protein; PFAM: Polysaccharide biosynthesis protein CapD-like; CoA-bindi

DNA sequence : 
ATGTCCCAGCCCACTTCTTCACCGGCACCGTCCCAACCCCTGGACCCGAATCAGGGGCCGAATGCAGCAGTCCGTTCGCA
CCAGATACAGAAATTCGCCATTGACCTGGGGCTGTGGACCTTGGCGGCGGCGCTGGCTTACCTGTACCGCAAGCCCAGCG
CCCTGACCGGCGGCCTGGGGGCCACGGCGCTGAGCGCGGGCGTGCTGGCCTATTTCCTGCTGAGTGCCCTGATTATGGCG
GCACTGAGCAGCTACTACGGGCTGTACCGCCAGACCTGGCGGCGCATCGGCGTGCCGGACCTGTTGCTGCTGCTGCGGGC
AGTGCTGCTGGCCACGGTGCTGGGCCTGGCAGCTGCGTTTTTGCTGCACGGCATTCTGGACCTGCCGCGCAGTGTCCCGC
TGCTGACCGGCGGTCTGGGGCTGCTGCTGCTGGGCGGGGTGCGCCTGCTGGCGCGGGTCCTGCACGAGCGGGTGCCGCTT
GAGCAGCGCACCGACCAGCGGCGGGTCCTGATTGTGGGCGCTGGAGAAGCCGGTACCCTGATTGTCCGCGAGATGCTGCG
GCATCCCAAATCGAAGCTGCACCCGGTGGGCTTCGTAGATGACGCACCCGACAAGCGCGGCACTCGGCTGGTGGGCCTGC
CGGTGTTCGGGCCTGTGTCCACCCTGCCGGATGTGGTCCGCCGTGAAGGGGTAGAAGAAGTGCTGATTGCGGTGCCCTCG
GCGGCGGGCACCTTTGTCCGCCGGGTGGTGGACCTCGCCAAGGATACCGGGGTGAGCTACCGGATTATTCCGGGGGTGTT
CGAGATTCTGTCGGGCAACGTGACGCTGGGCCAGATTCGCGATGTGAACCTGGAAGACCTGCTGCGGCGGCCGGCAGTGC
AGCTGAACACCGCCGAGATTGCCGGCTACCTGCGCGGCCGCACCGTACTGGTCACGGGCGCGGGAGGCAGCATCGGCTCG
GAAATCGTGCGGCAGATTCTGCCGTTCGGACCGGCCAGGGTCATTCTGCTGGGACGCGGCGAGGGCAGCATTTTTGCCAT
TCAGCAGGAGCTGCGCCGCCTGGCCCCGGAACTGCCGCAGCTGGCCCTGATTGGGGACGTGCGGGACGCTGAGCGGGTGG
AGCAGGTGTTCCGCGAAACCCGGCCGCAGGTGGTTTTTCATGCGGCGGCCCACAAGCATGTTCCGCTGATGGAAGCGGCC
CCTTCCGAAGCGATTCTCAACAATGTCATCGGCACCCGCAACGTGGTGGACATGAGCCTCAAATACGGCGTGGAGCGGCT
GGTCAACATCTCCACCGACAAGGCCGTCAACCCCACCAGCGTGATGGGCGCCAGCAAGCGCATGGCCGAGAAGACCGTCT
CGGCCGGAGCGGCGCGGGCGGCAGCGGGGCAAGCCTTCGTGTCGGTGCGCTTCGGCAATGTGCTGGGCAGCCGGGGCAGT
GTGGTGCCCACCTTCATGCGTCAGATTCGCCAGGGTGGCCCGGTGACGGTGACCCACCCGGAGATGACGCGCTACTTCAT
GACCATTCCCGAAGCGGCGCGGCTGGTGCTGCAGGCCGGTGGCCTGGCCGAGAACGGCAAAGTGTACGTGCTGAATATGG
GCGAGCCGGTCAACATTTCCGACCTGGCCCGTGACGTGATTCGGCTGAGTGGGGCGCAGGATATCGAGGTGGTCTACAGC
GGCGTGCGCCCCGGCGAGAAGCTGTATGAGGAACTGCTGACCTCCTCGGAAGGCACCGACGCCACCACCCACTCGGAGAT
TTTCAGCGCCCGGCTGGAGCGGGTGGACCCGGAGACACTGGACCGCGACATTGCCGGCCTGGAAGCGGCTGCCCGTGCCG
GCGACTCCCAGCACATCCGGGCCGAGCTGAACCGGATTATTCCTGAGAACAAGTTCGGGTCGCTGGGGTAG

Protein sequence : 
MSQPTSSPAPSQPLDPNQGPNAAVRSHQIQKFAIDLGLWTLAAALAYLYRKPSALTGGLGATALSAGVLAYFLLSALIMA
ALSSYYGLYRQTWRRIGVPDLLLLLRAVLLATVLGLAAAFLLHGILDLPRSVPLLTGGLGLLLLGGVRLLARVLHERVPL
EQRTDQRRVLIVGAGEAGTLIVREMLRHPKSKLHPVGFVDDAPDKRGTRLVGLPVFGPVSTLPDVVRREGVEEVLIAVPS
AAGTFVRRVVDLAKDTGVSYRIIPGVFEILSGNVTLGQIRDVNLEDLLRRPAVQLNTAEIAGYLRGRTVLVTGAGGSIGS
EIVRQILPFGPARVILLGRGEGSIFAIQQELRRLAPELPQLALIGDVRDAERVEQVFRETRPQVVFHAAAHKHVPLMEAA
PSEAILNNVIGTRNVVDMSLKYGVERLVNISTDKAVNPTSVMGASKRMAEKTVSAGAARAAAGQAFVSVRFGNVLGSRGS
VVPTFMRQIRQGGPVTVTHPEMTRYFMTIPEAARLVLQAGGLAENGKVYVLNMGEPVNISDLARDVIRLSGAQDIEVVYS
GVRPGEKLYEELLTSSEGTDATTHSEIFSARLERVDPETLDRDIAGLEAAARAGDSQHIRAELNRIIPENKFGSLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 7e-90 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipr_2068 YP_004264059.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 8e-70 43