Gene Information

Name : Deipr_1503 (Deipr_1503)
Accession : YP_004256258.1
Strain : Deinococcus proteolyticus MRP
Genome accession: NC_015161
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1600755 - 1601432 bp
Length : 678 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: ddr:Deide_01470 putative response regulator, CheY; PFAM: Signal transduction response regulator, receive

DNA sequence :
ATGGAACGTAAGCCCCTGGTGCTCGTCATCGAAGACGAGAAAGAAATTGCCCGCTTCATTGAACTGGAACTGGGGGCGGA
AGGATACACCACGGACGTGGCCTACGACGGCGTGACCGGCCTGAGCAAATTCCGTGAGGTGGCCCCGGACCTGGTGGTGC
TGGATCTGATGCTGCCAGTGCTGGACGGCCTGGAAGTGGCCCGCCGCATCCGCAAGACCAGCAATACCCCCATCATCATC
CTGACGGCCAAAGACGGCATCCAGGACAAGGTAGAAGGCCTGGACTCGGGCGCTGACGATTACCTCATCAAGCCCTTTTC
TATTGAGGAGTTGCTGGCCCGTGTGCGCGCCCACCTGCGCCGCGTGAACCCCGCCGTGACGGGTGAAGTGCGGGTGGCCG
ACCTGGTGATGAATCTGGATGGCCGCGAGATTTTCCGGGGTGGCCGGCGCGTGGAGCTGTCAGCCAAGGAGTTCGAGTTG
CTGGAACTGCTGGCCCGGAATCCCGGCAAGGTGTTCTCACGTTTTGAGATAGAAGAAAAGGTCTGGCCCGAGTACACCGG
CGGCAGCAATGTGGTGGACGTGTATATCGGCTATCTGCGCCGCAAGCTGGAAGAGGGAGGCGAGCGCCGCCTGATTCACA
CGGTCCGTGGCGTGGGCTACGTGCTGCGCGAAGAATAA

Protein sequence :
MERKPLVLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPVLDGLEVARRIRKTSNTPIII
LTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFEL
LELLARNPGKVFSRFEIEEKVWPEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-20 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-19 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family HE999704.1.gene1528. Protein 1e-25 48
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family AE015929.1.gene1106. Protein 7e-21 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 2e-24 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0125 Protein 7e-28 46
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0197 Protein 7e-23 45
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 6e-19 44
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0083 Protein 8e-24 44
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0308 Protein 5e-24 43
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0638 Protein 2e-15 43
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0347 Protein 3e-19 41
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family BAC0111 Protein 2e-22 41
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 9e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-30 50
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family VFG1389 Protein 1e-19 45
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family VFG0596 Protein 1e-20 43
Deipr_1503 YP_004256258.1 two component transcriptional regulator, winged helix family VFG1386 Protein 7e-22 42